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Research

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  Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats

  • Meredith M. Course,
  • Arvis Sulovari,
  • Kathryn Gudsnuk,
  • Evan E. Eichler,
  • and Paul N. Valdmanis

  Genome Res. August 2021 31: 1313-1324; Published in Advance July 9, 2021, doi:10.1101/gr.275560.121
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  Enhancers with tissue-specific activity are enriched in intronic regions

  • Beatrice Borsari,
  • Pablo Villegas-Mirón,
  • Sílvia Pérez-Lluch,
  • Isabel Turpin,
  • Hafid Laayouni,
  • Alba Segarra-Casas,
  • Jaume Bertranpetit,
  • Roderic Guigó,
  • and Sandra Acosta

  Genome Res. August 2021 31: 1325-1336; Published in Advance July 21, 2021, doi:10.1101/gr.270371.120
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  Large palindromes on the primate X Chromosome are preserved by natural selection

  • Emily K. Jackson,
  • Daniel W. Bellott,
  • Ting-Jan Cho,
  • Helen Skaletsky,
  • Jennifer F. Hughes,
  • Tatyana Pyntikova,
  • and David C. Page

  Genome Res. August 2021 31: 1337-1352; Published in Advance July 21, 2021, doi:10.1101/gr.275188.120
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  Genomic architecture constrained placental mammal X Chromosome evolution

  • Wesley A. Brashear,
  • Kevin R. Bredemeyer,
  • and William J. Murphy

  Genome Res. August 2021 31: 1353-1365; Published in Advance July 22, 2021, doi:10.1101/gr.275274.121
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  Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish

  • Amaury Herpin,
  • Manfred Schartl,
  • Alexandra Depincé,
  • Yann Guiguen,
  • Julien Bobe,
  • Aurélie Hua-Van,
  • Edward S. Hayman,
  • Anna Octavera,
  • Goro Yoshizaki,
  • Krista M. Nichols,
  • Giles W. Goetz,
  • and J. Adam Luckenbach

  Genome Res. August 2021 31: 1366-1380; Published in Advance June 28, 2021, doi:10.1101/gr.274266.120
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  Hydroxycarbamide effects on DNA methylation and gene expression in myeloproliferative neoplasms

  • Stephania Contreras Castillo,
  • Bertille Montibus,
  • Azucena Rocha,
  • Will Duke,
  • Ferdinand von Meyenn,
  • Donal McLornan,
  • Claire Harrison,
  • Ann Mullally,
  • Reiner Schulz,
  • and Rebecca J. Oakey

  Genome Res. August 2021 31: 1381-1394; Published in Advance July 9, 2021, doi:10.1101/gr.270066.120
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  Acute depletion of METTL3 implicates N⁶-methyladenosine in alternative intron/exon inclusion in the nascent transcriptome

  • Guifeng Wei,
  • Mafalda Almeida,
  • Greta Pintacuda,
  • Heather Coker,
  • Joseph S. Bowness,
  • Jernej Ule,
  • and Neil Brockdorff

  Genome Res. August 2021 31: 1395-1408; Published in Advance June 15, 2021, doi:10.1101/gr.271635.120
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  Genome-wide mapping reveals R-loops associated with centromeric repeats in maize

  • Yang Liu,
  • Qian Liu,
  • Handong Su,
  • Kunpeng Liu,
  • Xue Xiao,
  • Wei Li,
  • Qianwen Sun,
  • James A. Birchler,
  • and Fangpu Han

  Genome Res. August 2021 31: 1409-1418; Published in Advance July 9, 2021, doi:10.1101/gr.275270.121
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  Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells

  • Nick Riddiford,
  • Katarzyna Siudeja,
  • Marius van den Beek,
  • Benjamin Boumard,
  • and Allison J. Bardin

  Genome Res. August 2021 31: 1419-1432; Published in Advance June 24, 2021, doi:10.1101/gr.268441.120
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  Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

  • Morteza Roodgar,
  • Benjamin H. Good,
  • Nandita R. Garud,
  • Stephen Martis,
  • Mohan Avula,
  • Wenyu Zhou,
  • Samuel M. Lancaster,
  • Hayan Lee,
  • Afshin Babveyh,
  • Sophia Nesamoney,
  • Katherine S. Pollard,
  • and Michael P. Snyder

  Genome Res. August 2021 31: 1433-1446; Published in Advance July 22, 2021, doi:10.1101/gr.265058.120
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