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  A compendium of conserved cleavage and polyadenylation events in mammalian genes

  • Ruijia Wang,
  • Dinghai Zheng,
  • Ghassan Yehia,
  • and Bin Tian

  Genome Res. October 2018 28: 1427-1441; Published in Advance August 24, 2018, doi:10.1101/gr.237826.118
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  Exonic splice regulation imposes strong selection at synonymous sites

  • Rosina Savisaar and
  • Laurence D. Hurst

  Genome Res. October 2018 28: 1442-1454; Published in Advance August 24, 2018, doi:10.1101/gr.233999.117
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  Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns

  • Elisheva Javasky,
  • Inbal Shamir,
  • Shashi Gandhi,
  • Shawn Egri,
  • Oded Sandler,
  • Scott B. Rothbart,
  • Noam Kaplan,
  • Jacob D. Jaffe,
  • Alon Goren,
  • and Itamar Simon

  Genome Res. October 2018 28: 1455-1466; Published in Advance August 30, 2018, doi:10.1101/gr.230300.117
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  Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

  • Daniela S. Aliaga Goltsman,
  • Christine L. Sun,
  • Diana M. Proctor,
  • Daniel B. DiGiulio,
  • Anna Robaczewska,
  • Brian C. Thomas,
  • Gary M. Shaw,
  • David K. Stevenson,
  • Susan P. Holmes,
  • Jillian F. Banfield,
  • and David A. Relman

  Genome Res. October 2018 28: 1467-1480; Published in Advance September 19, 2018, doi:10.1101/gr.236000.118
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  Single-cell RNA-sequencing reveals the existence of naive and primed pluripotency in pre-implantation rhesus monkey embryos

  • Denghui Liu,
  • Xinyi Wang,
  • Dajian He,
  • Chunli Sun,
  • Xiechao He,
  • Lanzhen Yan,
  • Yizhou Li,
  • Jing-Dong J. Han,
  • and Ping Zheng

  Genome Res. October 2018 28: 1481-1493; Published in Advance August 28, 2018, doi:10.1101/gr.233437.117
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  Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes

  • Hamish W. King,
  • Nadezda A. Fursova,
  • Neil P. Blackledge,
  • and Robert J. Klose

  Genome Res. October 2018 28: 1494-1507; Published in Advance August 28, 2018, doi:10.1101/gr.237180.118
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  Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)

  • Jonas Ungerbäck,
  • Hiroyuki Hosokawa,
  • Xun Wang,
  • Tobias Strid,
  • Brian A. Williams,
  • Mikael Sigvardsson,
  • and Ellen V. Rothenberg

  Genome Res. October 2018 28: 1508-1519; Published in Advance August 31, 2018, doi:10.1101/gr.231423.117
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  A massively parallel reporter assay reveals context-dependent activity of homeodomain binding sites in vivo

  • Andrew E.O. Hughes,
  • Connie A. Myers,
  • and Joseph C. Corbo

  Genome Res. October 2018 28: 1520-1531; Published in Advance August 29, 2018, doi:10.1101/gr.231886.117
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  Phenotypically distinct female castes in honey bees are defined by alternative chromatin states during larval development

  • Marek Wojciechowski,
  • Robert Lowe,
  • Joanna Maleszka,
  • Danyal Conn,
  • Ryszard Maleszka,
  • and Paul J. Hurd

  Genome Res. October 2018 28: 1532-1542; Published in Advance August 22, 2018, doi:10.1101/gr.236497.118
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  Epigenetic analyses of planarian stem cells demonstrate conservation of bivalent histone modifications in animal stem cells

  • Anish Dattani,
  • Damian Kao,
  • Yuliana Mihaylova,
  • Prasad Abnave,
  • Samantha Hughes,
  • Alvina Lai,
  • Sounak Sahu,
  • and A. Aziz Aboobaker

  Genome Res. October 2018 28: 1543-1554; Published in Advance August 24, 2018, doi:10.1101/gr.239848.118
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  Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation

  • Bo Li,
  • Karl A.G. Kremling,
  • Penghao Wu,
  • Robert Bukowski,
  • Maria C. Romay,
  • En Xie,
  • Edward S. Buckler,
  • and Mingsheng Chen

  Genome Res. October 2018 28: 1555-1565; Published in Advance August 30, 2018, doi:10.1101/gr.229716.117
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