Table of Contents

April 2013; 23 (4)

Research

  • A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells

    • Keren Imberg-Kazdan,
    • Susan Ha,
    • Alex Greenfield,
    • Christopher S. Poultney,
    • Richard Bonneau,
    • Susan K. Logan,
    • and Michael J. Garabedian
    Genome Res. April 2013 23: 581-591; Published in Advance February 12, 2013, doi:10.1101/gr.144774.112

  • Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries

    • Janus Schou Jakobsen,
    • Johannes Waage,
    • Nicolas Rapin,
    • Hanne Cathrine Bisgaard,
    • Fin Stolze Larsen,
    • and Bo Torben Porse
    Genome Res. April 2013 23: 592-603; Published in Advance February 12, 2013, doi:10.1101/gr.146399.112

  • Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation

    • Jean Hausser,
    • Afzal Pasha Syed,
    • Biter Bilen,
    • and Mihaela Zavolan
    Genome Res. April 2013 23: 604-615; Published in Advance January 18, 2013, doi:10.1101/gr.139758.112
    OPEN ACCESS ARTICLE

  • High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice

    • Hisato Kobayashi,
    • Takayuki Sakurai,
    • Fumihito Miura,
    • Misaki Imai,
    • Kentaro Mochiduki,
    • Eikichi Yanagisawa,
    • Akihiko Sakashita,
    • Takuya Wakai,
    • Yutaka Suzuki,
    • Takashi Ito,
    • Yasuhisa Matsui,
    • and Tomohiro Kono
    Genome Res. April 2013 23: 616-627; Published in Advance February 14, 2013, doi:10.1101/gr.148023.112
    OPEN ACCESS ARTICLE

  • CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

    • Jonathan I. Gent,
    • Nathanael A. Ellis,
    • Lin Guo,
    • Alex E. Harkess,
    • Yingyin Yao,
    • Xiaoyu Zhang,
    • and R. Kelly Dawe
    Genome Res. April 2013 23: 628-637; Published in Advance December 26, 2012, doi:10.1101/gr.146985.112

  • Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans

    • Jitendra Thakur and
    • Kaustuv Sanyal
    Genome Res. April 2013 23: 638-652; Published in Advance February 25, 2013, doi:10.1101/gr.141614.112

  • A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

    • Matthew T.G. Holden,
    • Li-Yang Hsu,
    • Kevin Kurt,
    • Lucy A. Weinert,
    • Alison E. Mather,
    • Simon R. Harris,
    • Birgit Strommenger,
    • Franziska Layer,
    • Wolfgang Witte,
    • Herminia de Lencastre,
    • Robert Skov,
    • Henrik Westh,
    • Helena Žemličková,
    • Geoffrey Coombs,
    • Angela M. Kearns,
    • Robert L.R. Hill,
    • Jonathan Edgeworth,
    • Ian Gould,
    • Vanya Gant,
    • Jonathan Cooke,
    • Giles F. Edwards,
    • Paul R. McAdam,
    • Kate E. Templeton,
    • Angela McCann,
    • Zhemin Zhou,
    • Santiago Castillo-Ramírez,
    • Edward J. Feil,
    • Lyndsey O. Hudson,
    • Mark C. Enright,
    • Francois Balloux,
    • David M. Aanensen,
    • Brian G. Spratt,
    • J. Ross Fitzgerald,
    • Julian Parkhill,
    • Mark Achtman,
    • Stephen D. Bentley,
    • and Ulrich Nübel
    Genome Res. April 2013 23: 653-664; Published in Advance January 8, 2013, doi:10.1101/gr.147710.112
    OPEN ACCESS ARTICLE

Methods

  • ATARiS: Computational quantification of gene suppression phenotypes from multisample RNAi screens

    • Diane D. Shao,
    • Aviad Tsherniak,
    • Shuba Gopal,
    • Barbara A. Weir,
    • Pablo Tamayo,
    • Nicolas Stransky,
    • Steven E. Schumacher,
    • Travis I. Zack,
    • Rameen Beroukhim,
    • Levi A. Garraway,
    • Adam A. Margolin,
    • David E. Root,
    • William C. Hahn,
    • and Jill P. Mesirov
    Genome Res. April 2013 23: 665-678; Published in Advance December 26, 2012, doi:10.1101/gr.143586.112

  • RNA-seq–based mapping and candidate identification of mutations from forward genetic screens

    • Adam C. Miller,
    • Nikolaus D. Obholzer,
    • Arish N. Shah,
    • Sean G. Megason,
    • and Cecilia B. Moens
    Genome Res. April 2013 23: 679-686; Published in Advance January 8, 2013, doi:10.1101/gr.147322.112

  • MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

    • Jonathon T. Hill,
    • Bradley L. Demarest,
    • Brent W. Bisgrove,
    • Bushra Gorsi,
    • Yi-Chu Su,
    • and H. Joseph Yost
    Genome Res. April 2013 23: 687-697; Published in Advance January 8, 2013, doi:10.1101/gr.146936.112
    OPEN ACCESS ARTICLE

  • High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast

    • Ivan Liachko,
    • Rachel A. Youngblood,
    • Uri Keich,
    • and Maitreya J. Dunham
    Genome Res. April 2013 23: 698-704; Published in Advance December 12, 2012, doi:10.1101/gr.144659.112
    OPEN ACCESS ARTICLE

  • Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method

    • Zhi-Xiong Zhou,
    • Mei-Jun Zhang,
    • Xu Peng,
    • Yuko Takayama,
    • Xing-Ya Xu,
    • Ling-Zhi Huang,
    • and Li-Lin Du
    Genome Res. April 2013 23: 705-715; Published in Advance December 17, 2012, doi:10.1101/gr.146357.112

Resources

  • A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines

    • Liming Liang,
    • Nilesh Morar,
    • Anna L. Dixon,
    • G. Mark Lathrop,
    • Goncalo R. Abecasis,
    • Miriam F. Moffatt,
    • and William O.C. Cookson
    Genome Res. April 2013 23: 716-726; Published in Advance January 23, 2013, doi:10.1101/gr.142521.112
    OPEN ACCESS ARTICLE

  • A large-scale zebrafish gene knockout resource for the genome-wide study of gene function

    • Gaurav K. Varshney,
    • Jing Lu,
    • Derek E. Gildea,
    • Haigen Huang,
    • Wuhong Pei,
    • Zhongan Yang,
    • Sunny C. Huang,
    • David Schoenfeld,
    • Nam H. Pho,
    • David Casero,
    • Takashi Hirase,
    • Deborah Mosbrook-Davis,
    • Suiyuan Zhang,
    • Li-En Jao,
    • Bo Zhang,
    • Ian G. Woods,
    • Steven Zimmerman,
    • Alexander F. Schier,
    • Tyra G. Wolfsberg,
    • Matteo Pellegrini,
    • Shawn M. Burgess,
    • and Shuo Lin
    Genome Res. April 2013 23: 727-735; Published in Advance February 4, 2013, doi:10.1101/gr.151464.112

  • Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast

    • Min-Kyung Sung,
    • Gyubum Lim,
    • Dae-Gwan Yi,
    • Yeon Ji Chang,
    • Eun Bin Yang,
    • KiYoung Lee,
    • and Won-Ki Huh
    Genome Res. April 2013 23: 736-746; Published in Advance February 12, 2013, doi:10.1101/gr.148346.112

Erratum

|

This Issue

April 2013; 23 (4)
Cover
  1. Research
  2. Methods
  3. Resources
  4. Erratum

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research