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Table of Contents
March 2013; 23 (3)
Research
Select this article
Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations
Caroline Robberecht
,
Thierry Voet
,
Masoud Zamani Esteki
,
Beata A. Nowakowska
,
and
Joris R. Vermeesch
Genome Res.
March 2013
23
:
411
-
418
;
Published in Advance
December 3, 2012
,
doi:
10.1101/gr.145631.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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Rare allelic forms of
PRDM9
associated with childhood leukemogenesis
Julie Hussin
,
Daniel Sinnett
,
Ferran Casals
,
Youssef Idaghdour
,
Vanessa Bruat
,
Virginie Saillour
,
Jasmine Healy
,
Jean-Christophe Grenier
,
Thibault de Malliard
,
Stephan Busche
,
Jean-François Spinella
,
Mathieu Larivière
,
Greg Gibson
,
Anna Andersson
,
Linda Holmfeldt
,
Jing Ma
,
Lei Wei
,
Jinghui Zhang
,
Gregor Andelfinger
,
James R. Downing
,
Charles G. Mullighan
,
and
Philip Awadalla
Genome Res.
March 2013
23
:
419
-
430
;
Published in Advance
December 5, 2012
,
doi:
10.1101/gr.144188.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
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Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma
David H. Gutmann
,
Michael D. McLellan
,
Ibrahim Hussain
,
John W. Wallis
,
Lucinda L. Fulton
,
Robert S. Fulton
,
Vincent Magrini
,
Ryan Demeter
,
Todd Wylie
,
Cyriac Kandoth
,
Jeffrey R. Leonard
,
Abhijit Guha
,
Christopher A. Miller
,
Li Ding
,
and
Elaine R. Mardis
Genome Res.
March 2013
23
:
431
-
439
;
Published in Advance
December 5, 2012
,
doi:
10.1101/gr.142604.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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DAXX-dependent supply of soluble (H3.3–H4) dimers to PML bodies pending deposition into chromatin
Erwan Delbarre
,
Kristina Ivanauskiene
,
Thomas Küntziger
,
and
Philippe Collas
Genome Res.
March 2013
23
:
440
-
451
;
Published in Advance
December 5, 2012
,
doi:
10.1101/gr.142703.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
Helen M. Rowe
,
Adamandia Kapopoulou
,
Andrea Corsinotti
,
Liana Fasching
,
Todd S. Macfarlan
,
Yara Tarabay
,
Stéphane Viville
,
Johan Jakobsson
,
Samuel L. Pfaff
,
and
Didier Trono
Genome Res.
March 2013
23
:
452
-
461
;
Published in Advance
December 10, 2012
,
doi:
10.1101/gr.147678.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation
Ofir Hakim
,
Myong-Hee Sung
,
Shingo Nakayamada
,
Ty C. Voss
,
Songjoon Baek
,
and
Gordon L. Hager
Genome Res.
March 2013
23
:
462
-
472
;
Published in Advance
December 3, 2012
,
doi:
10.1101/gr.147652.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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Different chromatin interfaces of the
Drosophila
dosage compensation complex revealed by high-shear ChIP-seq
Tobias Straub
,
Angelika Zabel
,
Gregor D. Gilfillan
,
Christian Feller
,
and
Peter B. Becker
Genome Res.
March 2013
23
:
473
-
485
;
Published in Advance
December 11, 2012
,
doi:
10.1101/gr.146407.112
Abstract
Full Text
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A chromatin link to caste identity in the carpenter ant
Camponotus floridanus
Daniel F. Simola
,
Chaoyang Ye
,
Navdeep S. Mutti
,
Kelly Dolezal
,
Roberto Bonasio
,
Jürgen Liebig
,
Danny Reinberg
,
and
Shelley L. Berger
Genome Res.
March 2013
23
:
486
-
496
;
Published in Advance
December 3, 2012
,
doi:
10.1101/gr.148361.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
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High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
Zhen Shi
,
Taiowa A. Montgomery
,
Yan Qi
,
and
Gary Ruvkun
Genome Res.
March 2013
23
:
497
-
508
;
Published in Advance
January 30, 2013
,
doi:
10.1101/gr.149112.112
Abstract
Full Text
Full Text (PDF)
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Methods
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Genotype imputation via matrix completion
Eric C. Chi
,
Hua Zhou
,
Gary K. Chen
,
Diego Ortega Del Vecchyo
,
and
Kenneth Lange
Genome Res.
March 2013
23
:
509
-
518
;
Published in Advance
December 10, 2012
,
doi:
10.1101/gr.145821.112
Abstract
Full Text
Full Text (PDF)
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iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
Aziz M. Mezlini
,
Eric J.M. Smith
,
Marc Fiume
,
Orion Buske
,
Gleb L. Savich
,
Sohrab Shah
,
Sam Aparicio
,
Derek Y. Chiang
,
Anna Goldenberg
,
and
Michael Brudno
Genome Res.
March 2013
23
:
519
-
529
;
Published in Advance
November 29, 2012
,
doi:
10.1101/gr.142232.112
Abstract
Full Text
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Highly active zinc-finger nucleases by extended modular assembly
Mital S. Bhakta
,
Isabelle M. Henry
,
David G. Ousterout
,
Kumitaa Theva Das
,
Sarah H. Lockwood
,
Joshua F. Meckler
,
Mark C. Wallen
,
Artem Zykovich
,
Yawei Yu
,
Heather Leo
,
Lifeng Xu
,
Charles A. Gersbach
,
and
David J. Segal
Genome Res.
March 2013
23
:
530
-
538
;
Published in Advance
December 5, 2012
,
doi:
10.1101/gr.143693.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
OPEN ACCESS ARTICLE
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Obligate Ligation-Gated Recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joining
Marcello Maresca
,
Victor Guosheng Lin
,
Ning Guo
,
and
Yi Yang
Genome Res.
March 2013
23
:
539
-
546
;
Published in Advance
November 14, 2012
,
doi:
10.1101/gr.145441.112
Abstract
Full Text
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Supplemental Material
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Increasing frequencies of site-specific mutagenesis and gene targeting in
Arabidopsis
by manipulating DNA repair pathways
Yiping Qi
,
Yong Zhang
,
Feng Zhang
,
Joshua A. Baller
,
Spencer C. Cleland
,
Yungil Ryu
,
Colby G. Starker
,
and
Daniel F. Voytas
Genome Res.
March 2013
23
:
547
-
554
;
Published in Advance
January 2, 2013
,
doi:
10.1101/gr.145557.112
Abstract
Full Text
Full Text (PDF)
Supplemental Material
Resources
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Dynamic DNA methylation across diverse human cell lines and tissues
Katherine E. Varley
,
Jason Gertz
,
Kevin M. Bowling
,
Stephanie L. Parker
,
Timothy E. Reddy
,
Florencia Pauli-Behn
,
Marie K. Cross
,
Brian A. Williams
,
John A. Stamatoyannopoulos
,
Gregory E. Crawford
,
Devin M. Absher
,
Barbara J. Wold
,
and
Richard M. Myers
Genome Res.
March 2013
23
:
555
-
567
;
Published in Advance
January 16, 2013
,
doi:
10.1101/gr.147942.112
Abstract
Full Text
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Impact of genomic structural variation in
Drosophila melanogaster
based on population-scale sequencing
Thomas Zichner
,
David A. Garfield
,
Tobias Rausch
,
Adrian M. Stütz
,
Enrico Cannavó
,
Martina Braun
,
Eileen E.M. Furlong
,
and
Jan O. Korbel
Genome Res.
March 2013
23
:
568
-
579
;
Published in Advance
December 6, 2012
,
doi:
10.1101/gr.142646.112
Abstract
Full Text
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March 2013;
23
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