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Research

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  Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells

  • Donatella Canella,
  • Viviane Praz,
  • Jaime H. Reina,
  • Pascal Cousin,
  • and Nouria Hernandez

  Genome Res. June 2010 20: 710-721; Published in Advance April 22, 2010, doi:10.1101/gr.101337.109
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  Derepression of Polycomb targets during pancreatic organogenesis allows insulin-producing beta-cells to adopt a neural gene activity program

  • Joris van Arensbergen,
  • Javier García-Hurtado,
  • Ignasi Moran,
  • Miguel Angel Maestro,
  • Xiaobo Xu,
  • Mark Van de Casteele,
  • Anouchka L. Skoudy,
  • Matteo Palassini,
  • Harry Heimberg,
  • and Jorge Ferrer

  Genome Res. June 2010 20: 722-732; Published in Advance April 15, 2010, doi:10.1101/gr.101709.109
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  Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping

  • Pei-Yin Hsu,
  • Hang-Kai Hsu,
  • Gregory A.C. Singer,
  • Pearlly S. Yan,
  • Benjamin A.T. Rodriguez,
  • Joseph C. Liu,
  • Yu-I Weng,
  • Daniel E. Deatherage,
  • Zhong Chen,
  • Julia S. Pereira,
  • Ricardo Lopez,
  • Jose Russo,
  • Qianben Wang,
  • Coral A. Lamartiniere,
  • Kenneth P. Nephew,
  • and Tim H.-M. Huang

  Genome Res. June 2010 20: 733-744; Published in Advance May 4, 2010, doi:10.1101/gr.101923.109
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  Natural selection drives the accumulation of amino acid tandem repeats in human proteins

  • Loris Mularoni,
  • Alice Ledda,
  • Macarena Toll-Riera,
  • and M. Mar Albà

  Genome Res. June 2010 20: 745-754; Published in Advance March 24, 2010, doi:10.1101/gr.101261.109
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  Genome-wide evidence for selection acting on single amino acid repeats

  • Wilfried Haerty and
  • G. Brian Golding

  Genome Res. June 2010 20: 755-760; Published in Advance January 7, 2010, doi:10.1101/gr.101246.109
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  Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

  • Tyrone Ryba,
  • Ichiro Hiratani,
  • Junjie Lu,
  • Mari Itoh,
  • Michael Kulik,
  • Jinfeng Zhang,
  • Thomas C. Schulz,
  • Allan J. Robins,
  • Stephen Dalton,
  • and David M. Gilbert

  Genome Res. June 2010 20: 761-770; Published in Advance April 29, 2010, doi:10.1101/gr.099655.109
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  Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome

  • Michaela Schwaiger,
  • Hubertus Kohler,
  • Edward J. Oakeley,
  • Michael B. Stadler,
  • and Dirk Schübeler

  Genome Res. June 2010 20: 771-780; Published in Advance April 30, 2010, doi:10.1101/gr.101790.109
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  MRC1-dependent scaling of the budding yeast DNA replication timing program

  • Amnon Koren,
  • Ilya Soifer,
  • and Naama Barkai

  Genome Res. June 2010 20: 781-790; Published in Advance March 10, 2010, doi:10.1101/gr.102764.109
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  The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

  • Santosh S. Atanur,
  • İnanç Birol,
  • Victor Guryev,
  • Martin Hirst,
  • Oliver Hummel,
  • Catherine Morrissey,
  • Jacques Behmoaras,
  • Xose M. Fernandez-Suarez,
  • Michelle D. Johnson,
  • William M. McLaren,
  • Giannino Patone,
  • Enrico Petretto,
  • Charles Plessy,
  • Kathleen S. Rockland,
  • Charles Rockland,
  • Kathrin Saar,
  • Yongjun Zhao,
  • Piero Carninci,
  • Paul Flicek,
  • Ted Kurtz,
  • Edwin Cuppen,
  • Michal Pravenec,
  • Norbert Hubner,
  • Steven J.M. Jones,
  • Ewan Birney,
  • and Timothy J. Aitman

  Genome Res. June 2010 20: 791-803; Published in Advance April 29, 2010, doi:10.1101/gr.103499.109
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  Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species

  • Dan Xie,
  • Chieh-Chun Chen,
  • Leon M. Ptaszek,
  • Shu Xiao,
  • Xiaoyi Cao,
  • Fang Fang,
  • Huck H. Ng,
  • Harris A. Lewin,
  • Chad Cowan,
  • and Sheng Zhong

  Genome Res. June 2010 20: 804-815; Published in Advance March 10, 2010, doi:10.1101/gr.100594.109
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  Regulatory divergence in Drosophila revealed by mRNA-seq

  • C. Joel McManus,
  • Joseph D. Coolon,
  • Michael O. Duff,
  • Jodi Eipper-Mains,
  • Brenton R. Graveley,
  • and Patricia J. Wittkopp

  Genome Res. June 2010 20: 816-825; Published in Advance March 30, 2010, doi:10.1101/gr.102491.109
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  Natural selection on cis and trans regulation in yeasts

  • J.J. Emerson,
  • Li-Ching Hsieh,
  • Huang-Mo Sung,
  • Tzi-Yuan Wang,
  • Chih-Jen Huang,
  • Henry Horng-Shing Lu,
  • Mei-Yeh Jade Lu,
  • Shu-Hsing Wu,
  • and Wen-Hsiung Li

  Genome Res. June 2010 20: 826-836; Published in Advance May 5, 2010, doi:10.1101/gr.101576.109
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  Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

  • Nadine Borchert,
  • Christoph Dieterich,
  • Karsten Krug,
  • Wolfgang Schütz,
  • Stephan Jung,
  • Alfred Nordheim,
  • Ralf J. Sommer,
  • and Boris Macek

  Genome Res. June 2010 20: 837-846; Published in Advance March 17, 2010, doi:10.1101/gr.103119.109
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