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Research

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  The effect of translocation-induced nuclear reorganization on gene expression

  • Louise Harewood,
  • Frédéric Schütz,
  • Shelagh Boyle,
  • Paul Perry,
  • Mauro Delorenzi,
  • Wendy A. Bickmore,
  • and Alexandre Reymond

  Genome Res. May 2010 20: 554-564; Published in Advance March 8, 2010, doi:10.1101/gr.103622.109
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  Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers

  • Valer Gotea,
  • Axel Visel,
  • John M. Westlund,
  • Marcelo A. Nobrega,
  • Len A. Pennacchio,
  • and Ivan Ovcharenko

  Genome Res. May 2010 20: 565-577; Published in Advance April 2, 2010, doi:10.1101/gr.104471.109
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  A CTCF-independent role for cohesin in tissue-specific transcription

  • Dominic Schmidt,
  • Petra C. Schwalie,
  • Caryn S. Ross-Innes,
  • Antoni Hurtado,
  • Gordon D. Brown,
  • Jason S. Carroll,
  • Paul Flicek,
  • and Duncan T. Odom

  Genome Res. May 2010 20: 578-588; Published in Advance March 10, 2010, doi:10.1101/gr.100479.109
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  Reprogramming of miRNA networks in cancer and leukemia

  • Stefano Volinia,
  • Marco Galasso,
  • Stefan Costinean,
  • Luca Tagliavini,
  • Giacomo Gamberoni,
  • Alessandra Drusco,
  • Jlenia Marchesini,
  • Nicoletta Mascellani,
  • Maria Elena Sana,
  • Ramzey Abu Jarour,
  • Caroline Desponts,
  • Michael Teitell,
  • Raffaele Baffa,
  • Rami Aqeilan,
  • Marilena V. Iorio,
  • Cristian Taccioli,
  • Ramiro Garzon,
  • Gianpiero Di Leva,
  • Muller Fabbri,
  • Marco Catozzi,
  • Maurizio Previati,
  • Stefan Ambs,
  • Tiziana Palumbo,
  • Michela Garofalo,
  • Angelo Veronese,
  • Arianna Bottoni,
  • Pierluigi Gasparini,
  • Curtis C. Harris,
  • Rosa Visone,
  • Yuri Pekarsky,
  • Albert de la Chapelle,
  • Mark Bloomston,
  • Mary Dillhoff,
  • Laura Z. Rassenti,
  • Thomas J. Kipps,
  • Kay Huebner,
  • Flavia Pichiorri,
  • Dido Lenze,
  • Stefano Cairo,
  • Marie-Annick Buendia,
  • Pascal Pineau,
  • Anne Dejean,
  • Nicola Zanesi,
  • Simona Rossi,
  • George A. Calin,
  • Chang-Gong Liu,
  • Jeff Palatini,
  • Massimo Negrini,
  • Andrea Vecchione,
  • Anne Rosenberg,
  • and Carlo M. Croce

  Genome Res. May 2010 20: 589-599; doi:10.1101/gr.098046.109
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  The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important

  • Erika M. Kvikstad and
  • Kateryna D. Makova

  Genome Res. May 2010 20: 600-613; Published in Advance March 10, 2010, doi:10.1101/gr.099044.109
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  Global survey of escape from X inactivation by RNA-sequencing in mouse

  • Fan Yang,
  • Tomas Babak,
  • Jay Shendure,
  • and Christine M. Disteche

  Genome Res. May 2010 20: 614-622; Published in Advance April 2, 2010, doi:10.1101/gr.103200.109
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  Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

  • Aaron R. Quinlan,
  • Royden A. Clark,
  • Svetlana Sokolova,
  • Mitchell L. Leibowitz,
  • Yujun Zhang,
  • Matthew E. Hurles,
  • Joshua C. Mell,
  • and Ira M. Hall

  Genome Res. May 2010 20: 623-635; Published in Advance March 22, 2010, doi:10.1101/gr.102970.109
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  High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: Alternative expression modes and gene function correlates

  • Jun Matsumoto,
  • Ken Dewar,
  • Jessica Wasserscheid,
  • Graham B. Wiley,
  • Simone L. Macmil,
  • Bruce A. Roe,
  • Robert W. Zeller,
  • Yutaka Satou,
  • and Kenneth E.M. Hastings

  Genome Res. May 2010 20: 636-645; Published in Advance March 8, 2010, doi:10.1101/gr.100271.109
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  Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

  • Guojie Zhang,
  • Guangwu Guo,
  • Xueda Hu,
  • Yong Zhang,
  • Qiye Li,
  • Ruiqiang Li,
  • Ruhong Zhuang,
  • Zhike Lu,
  • Zengquan He,
  • Xiaodong Fang,
  • Li Chen,
  • Wei Tian,
  • Yong Tao,
  • Karsten Kristiansen,
  • Xiuqing Zhang,
  • Songgang Li,
  • Huanming Yang,
  • Jian Wang,
  • and Jun Wang

  Genome Res. May 2010 20: 646-654; Published in Advance March 19, 2010, doi:10.1101/gr.100677.109
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  Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities

  • Yassina Bechah,
  • Khalid El Karkouri,
  • Oleg Mediannikov,
  • Quentin Leroy,
  • Nicolas Pelletier,
  • Catherine Robert,
  • Claudine Médigue,
  • Jean-Louis Mege,
  • and Didier Raoult

  Genome Res. May 2010 20: 655-663; Published in Advance April 5, 2010, doi:10.1101/gr.103564.109
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  mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

  • Matthieu Legendre,
  • Stéphane Audic,
  • Olivier Poirot,
  • Pascal Hingamp,
  • Virginie Seltzer,
  • Deborah Byrne,
  • Audrey Lartigue,
  • Magali Lescot,
  • Alain Bernadac,
  • Julie Poulain,
  • Chantal Abergel,
  • and Jean-Michel Claverie

  Genome Res. May 2010 20: 664-674; Published in Advance April 1, 2010, doi:10.1101/gr.102582.109
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