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Research

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  Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia

  • Ali Torkamani,
  • Brian Dean,
  • Nicholas J. Schork,
  • and Elizabeth A. Thomas

  Genome Res. April 2010 20: 403-412; Published in Advance March 2, 2010, doi:10.1101/gr.101956.109
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  Integrative analysis of the melanoma transcriptome

  • Michael F. Berger,
  • Joshua Z. Levin,
  • Krishna Vijayendran,
  • Andrey Sivachenko,
  • Xian Adiconis,
  • Jared Maguire,
  • Laura A. Johnson,
  • James Robinson,
  • Roel G. Verhaak,
  • Carrie Sougnez,
  • Robert C. Onofrio,
  • Liuda Ziaugra,
  • Kristian Cibulskis,
  • Elisabeth Laine,
  • Jordi Barretina,
  • Wendy Winckler,
  • David E. Fisher,
  • Gad Getz,
  • Matthew Meyerson,
  • David B. Jaffe,
  • Stacey B. Gabriel,
  • Eric S. Lander,
  • Reinhard Dummer,
  • Andreas Gnirke,
  • Chad Nusbaum,
  • and Levi A. Garraway

  Genome Res. April 2010 20: 413-427; Published in Advance February 23, 2010, doi:10.1101/gr.103697.109
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  Genome-wide analysis of histone modifications in human pancreatic islets

  • Reena Bhandare,
  • Jonathan Schug,
  • John Le Lay,
  • Alan Fox,
  • Olga Smirnova,
  • Chengyang Liu,
  • Ali Naji,
  • and Klaus H. Kaestner

  Genome Res. April 2010 20: 428-433; Published in Advance February 24, 2010, doi:10.1101/gr.102038.109
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  Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

  • Vardhman K. Rakyan,
  • Thomas A. Down,
  • Siarhei Maslau,
  • Toby Andrew,
  • Tsun-Po Yang,
  • Huriya Beyan,
  • Pamela Whittaker,
  • Owen T. McCann,
  • Sarah Finer,
  • Ana M. Valdes,
  • R. David Leslie,
  • Panogiotis Deloukas,
  • and Timothy D. Spector

  Genome Res. April 2010 20: 434-439; Published in Advance March 10, 2010, doi:10.1101/gr.103101.109
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  Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer

  • Andrew E. Teschendorff,
  • Usha Menon,
  • Aleksandra Gentry-Maharaj,
  • Susan J. Ramus,
  • Daniel J. Weisenberger,
  • Hui Shen,
  • Mihaela Campan,
  • Houtan Noushmehr,
  • Christopher G. Bell,
  • A. Peter Maxwell,
  • David A. Savage,
  • Elisabeth Mueller-Holzner,
  • Christian Marth,
  • Gabrijela Kocjan,
  • Simon A. Gayther,
  • Allison Jones,
  • Stephan Beck,
  • Wolfgang Wagner,
  • Peter W. Laird,
  • Ian J. Jacobs,
  • and Martin Widschwendter

  Genome Res. April 2010 20: 440-446; Published in Advance March 10, 2010, doi:10.1101/gr.103606.109
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  Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

  • Chun-Long Chen,
  • Aurélien Rappailles,
  • Lauranne Duquenne,
  • Maxime Huvet,
  • Guillaume Guilbaud,
  • Laurent Farinelli,
  • Benjamin Audit,
  • Yves d'Aubenton-Carafa,
  • Alain Arneodo,
  • Olivier Hyrien,
  • and Claude Thermes

  Genome Res. April 2010 20: 447-457; Published in Advance January 26, 2010, doi:10.1101/gr.098947.109
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  Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance

  • Benjamin L. Kidder and
  • Stephen Palmer

  Genome Res. April 2010 20: 458-472; Published in Advance February 22, 2010, doi:10.1101/gr.101469.109
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  Positioned and G/C-capped poly(dA:dT) tracts associate with the centers of nucleosome-free regions in yeast promoters

  • Randy Wu and
  • Hao Li

  Genome Res. April 2010 20: 473-484; Published in Advance February 4, 2010, doi:10.1101/gr.103226.109
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  The recombination landscape of the zebra finch Taeniopygia guttata genome

  • Niclas Backström,
  • Wolfgang Forstmeier,
  • Holger Schielzeth,
  • Harriet Mellenius,
  • Kiwoong Nam,
  • Elisabeth Bolund,
  • Matthew T. Webster,
  • Torbjörn Öst,
  • Melanie Schneider,
  • Bart Kempenaers,
  • and Hans Ellegren

  Genome Res. April 2010 20: 485-495; Published in Advance March 31, 2010, doi:10.1101/gr.101410.109
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  Pronounced inter- and intrachromosomal variation in linkage disequilibrium across the zebra finch genome

  • Jessica Stapley,
  • Tim R. Birkhead,
  • Terry Burke,
  • and Jon Slate

  Genome Res. April 2010 20: 496-502; Published in Advance March 31, 2010, doi:10.1101/gr.102095.109
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  Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution

  • Martin Völker,
  • Niclas Backström,
  • Benjamin M. Skinner,
  • Elizabeth J. Langley,
  • Sydney K. Bunzey,
  • Hans Ellegren,
  • and Darren K. Griffin

  Genome Res. April 2010 20: 503-511; Published in Advance March 31, 2010, doi:10.1101/gr.103663.109
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  Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

  • Yuichiro Itoh,
  • Kirstin Replogle,
  • Yong-Hwan Kim,
  • Juli Wade,
  • David F. Clayton,
  • and Arthur P. Arnold

  Genome Res. April 2010 20: 512-518; Published in Advance March 31, 2010, doi:10.1101/gr.102343.109
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