Volume 34, Issue 1 | January 2024

Perspective
- - Why community consultation matters in genomic research benefit-sharing models
    Sarah LeBaron von Baeyer
    Rebecca Crocker
    Rindra Rakotoarivony
    Jean Freddy Ranaivoarisoa
    Germain Jules Spiral
    Stephane Castel Andrew Farnum
    ...[+2 authors]...,
    Holly Vance
    Noah Collins
    Keolu Fox
    Kaja Wasik
    First Published January 31, 2024
Research
- - Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement
    Peter A. Audano
    Christine R. Beck
    First Published January 4, 2024
  - Identification and validation of supervariants reveal novel loci associated with human white matter microstructure
    Shiying Wang
    Ting Li
    Bingxin Zhao
    Wei Dai
    Yisha Yao
    First Published December 12, 2023
  - Histone deacetylases maintain expression of the pluripotent gene network via recruitment of RNA polymerase II to coding and noncoding loci
    Richard D.W. Kelly
    Kristy R. Stengel
    Aditya Chandru
    Lyndsey C. Johnson
    Scott W. Hiebert
    First Published January 30, 2024
  - Oxidative stress accelerates intestinal tumorigenesis by enhancing 8-oxoguanine-mediated mutagenesis in MUTYH-deficient mice
    Mizuki Ohno
    Noriko Takano
    Kyoko Hidaka
    Fumiko Sasaki
    Kazumi Yamauchi
    Yasunobu Aoki
    ...[+1 authors]...,
    Takehiko Nohmi
    Yusaku Nakabeppu
    Yoshimichi Nakatsu
    Teruhisa Tsuzuki
    First Published January 30, 2024
  - Characterization of the distribution and dynamics of chromatin states in the C. elegans germline reveals substantial H3K4me3 remodeling during oogenesis
    Mariateresa Mazzetto
    Lauren E. Gonzalez
    Nancy Sanchez
    Valerie Reinke
    First Published December 26, 2023
Methods
- - Aberrant landscapes of maternal meiotic crossovers contribute to aneuploidies in human embryos
    Daniel Ariad
    Svetlana Madjunkova
    Mitko Madjunkov
    Siwei Chen
    Rina Abramov
    First Published December 1, 2023
  - A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data
    Fei Qin
    Guoshuai Cai
    Christopher I. Amos
    Feifei Xiao
    First Published January 30, 2024
  - A Bayesian framework to study tumor subclone–specific expression by combining bulk DNA and single-cell RNA sequencing data
    Yi Qiao
    Xiaomeng Huang
    Philip J. Moos
    Jonathan M. Ahmann
    Anthony D. Pomicter
    Michael W. Deininger
    ...[+1 authors]...,
    John C. Byrd
    Jennifer A. Woyach
    Deborah M. Stephens
    Gabor T. Marth
    First Published January 9, 2024
  - Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication
    Zihao Wang
    Zhenquan Zhang
    Songhao Luo
    Tianshou Zhou
    Jiajun Zhang
    First Published January 3, 2024
  - Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE
    Yingxin Lin
    Tung-Yu Wu
    Xi Chen
    Sheng Wan
    Brian Chao
    First Published December 15, 2023
  - High-throughput and genome-scale targeted mutagenesis using CRISPR in a nonmodel multicellular organism, Bombyx mori
    Sanyuan Ma
    Tong Zhang
    Ruolin Wang
    Pan Wang
    Yue Liu
    Jiasong Chang Aoming Wang Xinhui Lan Le Sun Hao Sun Run Shi Wei Lu Dan Liu Na Zhang Wenbo Hu
    ...[+10 authors]...,
    Xiaogang Wang
    Weiqing Xing
    Ling Jia
    Qingyou Xia
    First Published January 8, 2024
Resource
- - GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
    Robyn L. Ball
    Molly A. Bogue
    Hongping Liang
    Anuj Srivastava
    David G. Ashbrook
    Anna Lamoureux Matthew W. Gerring Alexander S. Hatoum Matthew J. Kim Hao He Jake Emerson Alexander K. Berger David O. Walton Keith Sheppard Baha El Kassaby Francisco Castellanos Govindarajan Kunde-Ramamoorthy Lu Lu John Bluis Sejal Desai Beth A. Sundberg Gary Peltz Zhuoqing Fang Gary A. Churchill Robert W. Williams
    ...[+20 authors]...,
    Arpana Agrawal
    Carol J. Bult
    Vivek M. Philip
    Elissa J. Chesler
    First Published January 30, 2024
Corrigendum
- - Corrigendum: A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons
    Qicheng Ma
    Satyam P. Srivastav
    Stephanie Gamez
    Gargi Dayama
    Fabiana Feitosa-Suntheimer
    Edward I. Patterson Rebecca M. Johnson Erik M. Matson Alexander S. Gold Douglas E. Brackney John H. Connor Tonya M. Colpitts Grant L. Hughes
    ...[+8 authors]...,
    Jason L. Rasgon
    Tony Nolan
    Omar S. Akbari
    Nelson C. Lau
    First Published February 7, 2024

Table of Contents

Volume 34, Issue 1 | January 2024

Perspective

Why community consultation matters in genomic research benefit-sharing models

Research

Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement

Identification and validation of supervariants reveal novel loci associated with human white matter microstructure

Histone deacetylases maintain expression of the pluripotent gene network via recruitment of RNA polymerase II to coding and noncoding loci

Oxidative stress accelerates intestinal tumorigenesis by enhancing 8-oxoguanine-mediated mutagenesis in MUTYH-deficient mice

Characterization of the distribution and dynamics of chromatin states in the C. elegans germline reveals substantial H3K4me3 remodeling during oogenesis

Methods

Aberrant landscapes of maternal meiotic crossovers contribute to aneuploidies in human embryos

A statistical learning method for simultaneous copy number estimation and subclone clustering with single-cell sequencing data

A Bayesian framework to study tumor subclone–specific expression by combining bulk DNA and single-cell RNA sequencing data

Power-law behavior of transcriptional bursting regulated by enhancer–promoter communication

Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE

High-throughput and genome-scale targeted mutagenesis using CRISPR in a nonmodel multicellular organism, Bombyx mori

Resource

GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis

Corrigendum

Corrigendum: A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons

Table of Contents

Volume 34, Issue 1 | January 2024

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Perspective

Research

Methods

Resource

Corrigendum