Volume 34, Issue 2 | February 2024

Review
- - The structure, function, and evolution of plant centromeres
    Matthew Naish
    Ian R. Henderson
    First Published March 14, 2024
Research
- - Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments
    John T. Chamberlin
    Younghee Lee
    Gabor T. Marth
    Aaron R. Quinlan
    First Published February 14, 2024
  - Genomic origin, fragmentomics, and transcriptional properties of long cell-free DNA molecules in human plasma
    Huiwen Che
    Peiyong Jiang
    L.Y. Lois Choy
    Suk Hang Cheng
    Wenlei Peng
    Rebecca W.Y. Chan Jing Liu Qing Zhou W.K. Jacky Lam Stephanie C.Y. Yu So Ling Lau Tak Y. Leung John Wong Vincent Wai-Sun Wong
    ...[+9 authors]...,
    Grace L.H. Wong
    Stephen L. Chan
    K.C. Allen Chan
    Y.M. Dennis Lo
    First Published February 26, 2024
  - Tyrosine 1–phosphorylated RNA polymerase II transcribes PROMPTs to facilitate proximal promoter pausing and induce global transcriptional repression in response to DNA damage
    Kamal Ajit
    Adele Alagia
    Kaspar Burger
    Monika Gullerova
    First Published March 11, 2024
  - Preferential formation of Z-RNA over intercalated motifs in long noncoding RNA
    Uditi Bhatt
    Anne Cucchiarini
    Yu Luo
    Cameron W. Evans
    Jean-Louis Mergny
    First Published February 14, 2024
  - RNA Pol II–dependent transcription efficiency fine-tunes A-to-I editing levels
    Brigitta Szabo
    Therese C. Mandl
    Bernhard Woldrich
    Gregor Diensthuber
    David Martin
    First Published March 12, 2024
  - Pathogenic variants in CRX have distinct cis-regulatory effects on enhancers and silencers in photoreceptors
    James L. Shepherdson
    Ryan Z. Friedman
    Yiqiao Zheng
    Chi Sun
    Inez Y. Oh
    First Published February 14, 2024
  - Dynamic DNA N6-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus
    Yongqiang Liu
    Junhua Niu
    Fei Ye
    Therese Solberg
    Borong Lu
    First Published March 12, 2024
  - Modeling alternative translation initiation sites in plants reveals evolutionarily conserved cis-regulatory codes in eukaryotes
    Ting-Ying Wu
    Ya-Ru Li
    Kai-Jyun Chang
    Jhen-Cheng Fang
    Daisuke Urano
    First Published March 13, 2024
  - Major impacts of widespread structural variation on sorghum
    Zhihai Zhang
    Joao Paulo Gomes Viana
    Bosen Zhang
    Kimberly K.O. Walden
    Hans Müller Paul
    Stephen P. Moose Geoffrey P. Morris
    ...[+2 authors]...,
    Chris Daum
    Kerrie W. Barry
    Nadia Shakoor
    Matthew E. Hudson
    First Published March 13, 2024
Resources
- - Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle
    Alexander S. Leonard
    Xena M. Mapel
    Hubert Pausch
    First Published February 14, 2024
  - Haplotype-resolved 3D chromatin architecture of the hybrid pig
    Yu Lin
    Jing Li
    Yiren Gu
    Long Jin
    Jingyi Bai
    Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
    ...[+28 authors]...,
    Liangpeng Ge
    Xuewei Li
    Qianzi Tang
    Mingzhou Li
    First Published March 13, 2024
  - Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes
    Wenjuan Yu
    Haohui Luo
    Jinbao Yang
    Shengchen Zhang
    Heling Jiang
    Xianjia Zhao Xingqi Hui Da Sun
    ...[+3 authors]...,
    Liang Li
    Xiu-qing Wei
    Stefano Lonardi
    Weihua Pan
    First Published March 1, 2024

Table of Contents

Volume 34, Issue 2 | February 2024

Review

The structure, function, and evolution of plant centromeres

Research

Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments

Genomic origin, fragmentomics, and transcriptional properties of long cell-free DNA molecules in human plasma

Tyrosine 1–phosphorylated RNA polymerase II transcribes PROMPTs to facilitate proximal promoter pausing and induce global transcriptional repression in response to DNA damage

Preferential formation of Z-RNA over intercalated motifs in long noncoding RNA

RNA Pol II–dependent transcription efficiency fine-tunes A-to-I editing levels

Pathogenic variants in CRX have distinct cis-regulatory effects on enhancers and silencers in photoreceptors

Dynamic DNA N6-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus

Modeling alternative translation initiation sites in plants reveals evolutionarily conserved cis-regulatory codes in eukaryotes

Major impacts of widespread structural variation on sorghum

Resources

Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle

Haplotype-resolved 3D chromatin architecture of the hybrid pig

Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes

Table of Contents

Volume 34, Issue 2 | February 2024

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Review

Research

Resources