Volume 33, Issue 9 | September 2023

Research
- - Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing
    Russell J. Butterfield
    Diane M. Dunn
    Brett Duval
    Sarah Moldt
    Robert B. Weiss
    First Published October 5, 2023
  - The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome
    Young-Lim Lee
    Aniek C. Bouwman
    Chad Harland
    Mirte Bosse
    Gabriel Costa Monteiro Moreira
    Roel F. Veerkamp Erik Mullaart Nadine Cambisano Martien A.M. Groenen
    ...[+4 authors]...,
    Latifa Karim
    Wouter Coppieters
    Michel Georges
    Carole Charlier
    First Published October 4, 2023
  - Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development
    Patricia Gerdes
    Dorothy Chan
    Mischa Lundberg
    Francisco J. Sanchez-Luque
    Gabriela O. Bodea
    First Published October 5, 2023
  - ZSWIM8 destabilizes many murine microRNAs and is required for proper embryonic growth and development
    Charlie Y. Shi
    Lara E. Elcavage
    Raghu R. Chivukula
    Joanna Stefano
    Benjamin Kleaveland
    First Published August 2, 2023
  - The predicted RNA-binding protein regulome of axonal mRNAs
    Raphaëlle Luisier
    Catia Andreassi
    Lisa Fournier
    Antonella Riccio
    First Published August 15, 2023
  - Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits
    Elise Parey
    Diego Fernandez-Aroca
    Stephanie Frost
    Ainhoa Uribarren
    Thomas J. Park
    First Published August 25, 2023
  - Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
    Kazuaki Yamaguchi
    Yoshinobu Uno
    Mitsutaka Kadota
    Osamu Nishimura
    Ryo Nozu
    First Published August 17, 2023
  - Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains
    Marta Coronado-Zamora
    Josefa González
    First Published October 4, 2023
  - Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity
    Xinhai Ye
    Chun He
    Yi Yang
    Yu H. Sun
    Shijiao Xiong
    Kevin C. Chan Yuxuan Si Shan Xiao Xianxin Zhao Haiwei Lin Yang Mei
    ...[+6 authors]...,
    Yufeng Yao
    Gongyin Ye
    Fei Wu
    Qi Fang
    First Published October 5, 2023
  - Genetic inhibitors of APOBEC3B-induced mutagenesis
    Tony M. Mertz
    Elizabeth Rice-Reynolds
    Ly Nguyen
    Anna Wood
    Cameron Cordero
    Nicholas Bray Victoria Harcy
    ...[+2 authors]...,
    Rudri K. Vyas
    Debra Mitchell
    Kirill Lobachev
    Steven A. Roberts
    First Published August 2, 2023
  - Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii
    Frédéric Chaux
    Nicolas Agier
    Clotilde Garrido
    Gilles Fischer
    Stephan Eberhard
    First Published August 14, 2023
Methods
- - Fast and accurate out-of-core PCA framework for large scale biobank data
    Zilong Li
    Jonas Meisner
    Anders Albrechtsen
    First Published August 24, 2023
  - Dissecting and improving gene regulatory network inference using single-cell transcriptome data
    Lingfeng Xue
    Yan Wu
    Yihan Lin
    First Published August 14, 2023
  - Accurate and fast graph-based pangenome annotation and clustering with ggCaller
    Samuel T. Horsfield
    Gerry Tonkin-Hill
    Nicholas J. Croucher
    John A. Lees
    First Published August 24, 2023
Resource
- - An 11-point time course midgut transcriptome across 72 h after bloodfeeding provides detailed temporal resolution of transcript expression in the arbovirus vector, Aedes aegypti
    Hitoshi Tsujimoto
    Zach N. Adelman
    First Published October 6, 2023

Table of Contents

Volume 33, Issue 9 | September 2023

Research

Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing

The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome

Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development

ZSWIM8 destabilizes many murine microRNAs and is required for proper embryonic growth and development

The predicted RNA-binding protein regulome of axonal mRNAs

Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits

Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization

Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains

Comprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity

Genetic inhibitors of APOBEC3B-induced mutagenesis

Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii

Methods

Fast and accurate out-of-core PCA framework for large scale biobank data

Dissecting and improving gene regulatory network inference using single-cell transcriptome data

Accurate and fast graph-based pangenome annotation and clustering with ggCaller

Resource

An 11-point time course midgut transcriptome across 72 h after bloodfeeding provides detailed temporal resolution of transcript expression in the arbovirus vector, Aedes aegypti

Table of Contents

Volume 33, Issue 9 | September 2023

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Research

Methods

Resource