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  Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells

  • Parijat Senapati,
  • Masaru Miyano,
  • Rosalyn W. Sayaman,
  • Mudaser Basam,
  • Amy Leung,
  • Mark A. LaBarge,
  • and Dustin E. Schones

  Genome Res. August 2023 33: 1229-1241; Published in Advance July 18, 2023, doi:10.1101/gr.277511.122
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  Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins

  • Rosario Avolio,
  • Ilenia Agliarulo,
  • Daniela Criscuolo,
  • Daniela Sarnataro,
  • Margherita Auriemma,
  • Sabrina De Lella,
  • Sara Pennacchio,
  • Giovanni Calice,
  • Martin Y. Ng,
  • Carlotta Giorgi,
  • Paolo Pinton,
  • Barry S. Cooperman,
  • Matteo Landriscina,
  • Franca Esposito,
  • and Danilo Swann Matassa

  Genome Res. August 2023 33: 1242-1257; Published in Advance July 24, 2023, doi:10.1101/gr.277755.123
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  Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features

  • Marielle L. Bond,
  • Eric S. Davis,
  • Ivana Y. Quiroga,
  • Anubha Dey,
  • Manjari Kiran,
  • Michael I. Love,
  • Hyejung Won,
  • and Douglas H. Phanstiel

  Genome Res. August 2023 33: 1258-1268; Published in Advance September 12, 2023, doi:10.1101/gr.277397.122
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  Ultra-long-range interactions between active regulatory elements

  • Elias T. Friman,
  • Ilya M. Flyamer,
  • Davide Marenduzzo,
  • Shelagh Boyle,
  • and Wendy A. Bickmore

  Genome Res. August 2023 33: 1269-1283; Published in Advance July 14, 2023, doi:10.1101/gr.277567.122
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  A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

  • Xuelei Dai,
  • Peipei Bian,
  • Dexiang Hu,
  • Funong Luo,
  • Yongzhen Huang,
  • Shaohua Jiao,
  • Xihong Wang,
  • Mian Gong,
  • Ran Li,
  • Yudong Cai,
  • Jiayue Wen,
  • Qimeng Yang,
  • Weidong Deng,
  • Hojjat Asadollahpour Nanaei,
  • Yu Wang,
  • Fei Wang,
  • Zijing Zhang,
  • Benjamin D. Rosen,
  • Rasmus Heller,
  • and Yu Jiang

  Genome Res. August 2023 33: 1284-1298; Published in Advance September 15, 2023, doi:10.1101/gr.277481.122
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  Historical RNA expression profiles from the extinct Tasmanian tiger

  • Emilio Mármol-Sánchez,
  • Bastian Fromm,
  • Nikolay Oskolkov,
  • Zoé Pochon,
  • Panagiotis Kalogeropoulos,
  • Eli Eriksson,
  • Inna Biryukova,
  • Vaishnovi Sekar,
  • Erik Ersmark,
  • Björn Andersson,
  • Love Dalén,
  • and Marc R. Friedländer

  Genome Res. August 2023 33: 1299-1316; Published in Advance July 18, 2023, doi:10.1101/gr.277663.123
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  Extensive variation in germline de novo mutations in Poecilia reticulata

  • Yuying Lin,
  • Iulia Darolti,
  • Wouter van der Bijl,
  • Jake Morris,
  • and Judith E. Mank

  Genome Res. August 2023 33: 1317-1324; Published in Advance July 13, 2023, doi:10.1101/gr.277936.123
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  Transposable elements drive the evolution of metazoan zinc finger genes

  • Jonathan N. Wells,
  • Ni-Chen Chang,
  • John McCormick,
  • Caitlyn Coleman,
  • Nathalie Ramos,
  • Bozhou Jin,
  • and Cédric Feschotte

  Genome Res. August 2023 33: 1325-1339; Published in Advance September 15, 2023, doi:10.1101/gr.277966.123
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  Copy number variation alters local and global mutational tolerance

  • Grace Avecilla,
  • Pieter Spealman,
  • Julia Matthews,
  • Elodie Caudal,
  • Joseph Schacherer,
  • and David Gresham

  Genome Res. August 2023 33: 1340-1353; Published in Advance August 31, 2023, doi:10.1101/gr.277625.122
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