Volume 33, Issue 8 | August 2023

Research
- - Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells
    Parijat Senapati
    Masaru Miyano
    Rosalyn W. Sayaman
    Mudaser Basam
    Amy Leung
    First Published July 18, 2023
  - Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins
    Rosario Avolio
    Ilenia Agliarulo
    Daniela Criscuolo
    Daniela Sarnataro
    Margherita Auriemma
    Sabrina De Lella Sara Pennacchio Giovanni Calice Martin Y. Ng Carlotta Giorgi Paolo Pinton
    ...[+6 authors]...,
    Barry S. Cooperman
    Matteo Landriscina
    Franca Esposito
    Danilo Swann Matassa
    First Published July 24, 2023
  - Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features
    Marielle L. Bond
    Eric S. Davis
    Ivana Y. Quiroga
    Anubha Dey
    Manjari Kiran
    First Published September 12, 2023
  - Ultra-long-range interactions between active regulatory elements
    Elias T. Friman
    Ilya M. Flyamer
    Davide Marenduzzo
    Shelagh Boyle
    Wendy A. Bickmore
    First Published July 14, 2023
  - A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species
    Xuelei Dai
    Peipei Bian
    Dexiang Hu
    Funong Luo
    Yongzhen Huang
    Shaohua Jiao Xihong Wang Mian Gong Ran Li Yudong Cai Jiayue Wen Qimeng Yang Weidong Deng Hojjat Asadollahpour Nanaei Yu Wang Fei Wang
    ...[+11 authors]...,
    Zijing Zhang
    Benjamin D. Rosen
    Rasmus Heller
    Yu Jiang
    First Published September 15, 2023
  - Historical RNA expression profiles from the extinct Tasmanian tiger
    Emilio Mármol-Sánchez
    Bastian Fromm
    Nikolay Oskolkov
    Zoé Pochon
    Panagiotis Kalogeropoulos
    Eli Eriksson Inna Biryukova Vaishnovi Sekar
    ...[+3 authors]...,
    Erik Ersmark
    Björn Andersson
    Love Dalén
    Marc R. Friedländer
    First Published July 18, 2023
  - Extensive variation in germline de novo mutations in Poecilia reticulata
    Yuying Lin
    Iulia Darolti
    Wouter van der Bijl
    Jake Morris
    Judith E. Mank
    First Published July 13, 2023
  - Transposable elements drive the evolution of metazoan zinc finger genes
    Jonathan N. Wells
    Ni-Chen Chang
    John McCormick
    Caitlyn Coleman
    Nathalie Ramos
    First Published September 15, 2023
  - Copy number variation alters local and global mutational tolerance
    Grace Avecilla
    Pieter Spealman
    Julia Matthews
    Elodie Caudal
    Joseph Schacherer
    First Published August 31, 2023
Methods
- - Diffusion-enhanced characterization of 3D chromatin structure reveals its linkage to gene regulatory networks and the interactome
    Yueying He
    Yue Xue
    Jingyao Wang
    Yupeng Huang
    Lu Liu
    First Published July 25, 2023
  - Allele-specific RNA N6-methyladenosine modifications reveal functional genetic variants in human tissues
    Shuo Cao
    Haoran Zhu
    Jinru Cui
    Sun Liu
    Yuhe Li
    Junfang Shi Junyuan Mo Zihan Wang Hailan Wang Jiaxin Hu
    ...[+5 authors]...,
    Lizhi Chen
    Yuan Li
    Laixin Xia
    Shan Xiao
    First Published September 15, 2023
  - A transcriptome-based single-cell biological age model and resource for tissue-specific aging measures
    Shulin Mao
    Jiayu Su
    Longteng Wang
    Xiaochen Bo
    Cheng Li
    First Published July 31, 2023
  - Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models
    Dalibor Miklík
    Jiří Grim
    Daniel Elleder
    Jiří Hejnar
    First Published July 18, 2023
Resources
- - Genetic features and genomic targets of human KRAB-zinc finger proteins
    Jonas de Tribolet-Hardy
    Christian W. Thorball
    Romain Forey
    Evarist Planet
    Julien Duc
    Alexandre Coudray Bara Khubieh Sandra Offner Cyril Pulver
    ...[+4 authors]...,
    Jacques Fellay
    Michael Imbeault
    Priscilla Turelli
    Didier Trono
    First Published September 20, 2023
  - Spatial transcriptomics reveals asymmetric cellular responses to injury in the regenerating spiny mouse (Acomys) ear
    Henriëtte van Beijnum
    Tim Koopmans
    Antonio Tomasso
    Vanessa Disela
    Severin te Lindert
    First Published September 19, 2023

Table of Contents

Volume 33, Issue 8 | August 2023

Research

Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells

Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins

Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features

Ultra-long-range interactions between active regulatory elements

A Chinese indicine pangenome reveals a wealth of novel structural variants introgressed from other Bos species

Historical RNA expression profiles from the extinct Tasmanian tiger

Extensive variation in germline de novo mutations in Poecilia reticulata

Transposable elements drive the evolution of metazoan zinc finger genes

Copy number variation alters local and global mutational tolerance

Methods

Diffusion-enhanced characterization of 3D chromatin structure reveals its linkage to gene regulatory networks and the interactome

Allele-specific RNA N6-methyladenosine modifications reveal functional genetic variants in human tissues

A transcriptome-based single-cell biological age model and resource for tissue-specific aging measures

Unraveling the palindromic and nonpalindromic motifs of retroviral integration site sequences by statistical mixture models

Resources

Genetic features and genomic targets of human KRAB-zinc finger proteins

Spatial transcriptomics reveals asymmetric cellular responses to injury in the regenerating spiny mouse (Acomys) ear

Table of Contents

Volume 33, Issue 8 | August 2023

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Research

Methods

Resources