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  Gaps and complex structurally variant loci in phased genome assemblies

  • David Porubsky,
  • Mitchell R. Vollger,
  • William T. Harvey,
  • Allison N. Rozanski,
  • Peter Ebert,
  • Glenn Hickey,
  • Patrick Hasenfeld,
  • Ashley D. Sanders,
  • Catherine Stober,
  • Human Pangenome Reference Consortium,
  • Jan O. Korbel,
  • Benedict Paten,
  • Tobias Marschall,
  • and Evan E. Eichler

  Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
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  The motif composition of variable number tandem repeats impacts gene expression

  • Tsung-Yu Lu,
  • Paulina N. Smaruj,
  • Geoffrey Fudenberg,
  • Nicholas Mancuso,
  • and Mark J.P. Chaisson

  Genome Res. April 2023 33: 511-524; Published in Advance April 10, 2023, doi:10.1101/gr.276768.122
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  Motif conservation, stability, and host gene expression are the main drivers of snoRNA expression across vertebrates

  • Étienne Fafard-Couture,
  • Pierre-Étienne Jacques,
  • and Michelle S. Scott

  Genome Res. April 2023 33: 525-540; Published in Advance April 18, 2023, doi:10.1101/gr.277483.122
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  MYT1L is required for suppressing earlier neuronal development programs in the adult mouse brain

  • Jiayang Chen,
  • Nicole A. Fuhler,
  • Kevin K. Noguchi,
  • and Joseph D. Dougherty

  Genome Res. April 2023 33: 541-556; Published in Advance April 26, 2023, doi:10.1101/gr.277413.122
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  High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis

  • Yuan Lu,
  • Edward Rice,
  • Kang Du,
  • Susanne Kneitz,
  • Magali Naville,
  • Corentin Dechaud,
  • Jean-Nicolas Volff,
  • Mikki Boswell,
  • William Boswell,
  • LaDeana Hillier,
  • Chad Tomlinson,
  • Kremitzki Milin,
  • Ronald B. Walter,
  • Manfred Schartl,
  • and Wesley C. Warren

  Genome Res. April 2023 33: 557-571; Published in Advance May 5, 2023, doi:10.1101/gr.277434.122
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  Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development

  • Hiroto S. Fukushima,
  • Hiroyuki Takeda,
  • and Ryohei Nakamura

  Genome Res. April 2023 33: 572-586; Published in Advance April 28, 2023, doi:10.1101/gr.277577.122
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  Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans

  • Yiguan Wang,
  • Paul McNeil,
  • Rashidatu Abdulazeez,
  • Marta Pascual,
  • Susan E. Johnston,
  • Peter D. Keightley,
  • and Darren J. Obbard

  Genome Res. April 2023 33: 587-598; Published in Advance April 10, 2023, doi:10.1101/gr.277383.122
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  Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa

  • Mariana Villalba de la Peña,
  • Pauliina A.M. Summanen,
  • Martta Liukkonen,
  • and Ilkka Kronholm

  Genome Res. April 2023 33: 599-611; Published in Advance March 15, 2023, doi:10.1101/gr.276992.122
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