Volume 33, Issue 3 | March 2023

Research
- - Global loss of cellular m6A RNA methylation following infection with different SARS-CoV-2 variants
    Roshan Vaid
    Akram Mendez
    Ketan Thombare
    Rebeca Burgos-Panadero
    Rémy Robinot
    Barbara F. Fonseca Nikhil R. Gandasi Johan Ringlander Mohammad Hassan Baig Jae-June Dong Jae Yong Cho
    ...[+6 authors]...,
    Björn Reinius
    Lisa A. Chakrabarti
    Kristina Nystrom
    Tanmoy Mondal
    First Published March 1, 2023
  - Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis
    Arun B. Dutta
    Daniel S. Lank
    Roza K. Przanowska
    Piotr Przanowski
    Lixin Wang
    First Published February 21, 2023
  - The impact of SWI/SNF and NuRD inactivation on gene expression is tightly coupled with levels of RNA polymerase II occupancy at promoters
    Sachin Pundhir
    Jinyu Su
    Marta Tapia
    Anne Meldgaard Hansen
    James Seymour Haile
    First Published March 16, 2023
  - Enhancers display constrained sequence flexibility and context-specific modulation of motif function
    Franziska Reiter
    Bernardo P. de Almeida
    Alexander Stark
    First Published March 20, 2023
  - Large haplotypes highlight a complex age structure within the maize pan-genome
    Jianing Liu
    R. Kelly Dawe
    First Published February 28, 2023
  - SWATH-MS-based proteogenomic analysis reveals the involvement of alternative splicing in poplar upon lead stress
    Fu-Yuan Zhu
    Xin Chen
    Yu-Chen Song
    Lydia Pui Ying Lam
    Yuki Tobimatsu
    First Published March 24, 2023
Methods
- - Defining the separation landscape of topological domains for decoding consensus domain organization of the 3D genome
    Dachang Dang
    Shao-Wu Zhang
    Ran Duan
    Shihua Zhang
    First Published March 9, 2023
  - Simultaneous profiling of host expression and microbial abundance by spatial metatranscriptome sequencing
    Lin Lyu
    Xue Li
    Ru Feng
    Xin Zhou
    Tuhin K. Guha
    Xiaofei Yu Guo Qiang Chen Yufeng Yao
    ...[+3 authors]...,
    Bing Su
    Duowu Zou
    Michael P. Snyder
    Lei Chen
    First Published March 27, 2023
  - Tn5 tagments and transposes oligos to single-stranded DNA for strand-specific RNA sequencing
    Yanjun Zhang
    Yin Tang
    Zhongxing Sun
    Junqi Jia
    Yuan Fang
    First Published March 23, 2023
  - Evaluation of N6-methyldeoxyadenosine antibody-based genomic profiling in eukaryotes
    Brian M. Debo
    Benjamin J. Mallory
    Andrew B. Stergachis
    First Published February 14, 2023
Resources
- - Genome-wide identification of tandem repeats associated with splicing variation across 49 tissues in humans
    Kohei Hamanaka
    Daisuke Yamauchi
    Eriko Koshimizu
    Kei Watase
    Kaoru Mogushi
    Kinya Ishikawa Hidehiro Mizusawa Naomi Tsuchida Yuri Uchiyama Atsushi Fujita
    ...[+5 authors]...,
    Kazuharu Misawa
    Takeshi Mizuguchi
    Satoko Miyatake
    Naomichi Matsumoto
    First Published March 27, 2023
  - Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype
    Julie A. Karl
    Trent M. Prall
    Hailey E. Bussan
    Joshua M. Varghese
    Aparna Pal
    First Published February 28, 2023
  - A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes
    Ran Li
    Mian Gong
    Xinmiao Zhang
    Fei Wang
    Zhenyu Liu
    Lei Zhang Qimeng Yang Yuan Xu Mengsi Xu Huanhuan Zhang Yunfeng Zhang Xuelei Dai Yuanpeng Gao Zhuangbiao Zhang Wenwen Fang Yuta Yang Weiwei Fu Chunna Cao Peng Yang Zeinab Amiri Ghanatsaman Niloufar Jafarpour Negari Hojjat Asadollahpour Nanaei Xiangpeng Yue Yuxuan Song Xianyong Lan Weidong Deng Xihong Wang Chuanying Pan Ruidong Xiang Eveline M. Ibeagha-Awemu Pat (J.S.) Heslop-Harrison
    ...[+26 authors]...,
    Benjamin D. Rosen
    Johannes A. Lenstra
    Shangquan Gan
    Yu Jiang
    First Published April 3, 2023

Table of Contents

Volume 33, Issue 3 | March 2023

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Research

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Resources