Index by Author

February 2023; 33 (2)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Acharya, Sonia N.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  2. Achrainer, Matthias

  3. Adey, Andrew C.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  4. Angelini, Claudia

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

B

  1. Batut, Bérénice

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

  2. Baxevanis, Andreas D.

  3. Bernt, Matthias

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

  4. Bertemes, Philip

  5. Bray, Simon

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

C

  1. Cao, Bin

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  2. Cazet, Jack F.

  3. Chandra, Omkar

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  4. Chawla, Smriti

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  5. Chen, Shuai

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  6. Chilton, John

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

  7. Chung, Philip E.D.

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  8. Co, Marissa

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  9. Cock, Peter J.A.

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

Č

  1. Čech, Martin

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

D

  1. Davis, Christel M.

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  2. Della Ragione, Floriana

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  3. Du, Cui

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

E

  1. Ehli, Erik A.

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  2. El-Kurdi, Abdullah

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  3. El-Rassi, Inaam

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

F

  1. Fan, Hairui

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  2. Fields, Andrew J.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  3. Fioriniello, Salvatore

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  4. Fredriksen, Mark T.

G

  1. Gao, Yi Qin

  2. Garg, Paras

  3. Gendoo, Deena M.A.

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  4. Grüning, Björn

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

H

  1. Hakonarson, Hakon

    • Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning Genome Res. February 2023 33: 232-246; Published in Advance February 27, 2023, doi:10.1101/gr.277068.122

  2. Hallal, Mohammad

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  3. He, Yueying

  4. Hobmayer, Bert

I

  1. Idriss, Salam

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

J

  1. Jadhav, Bharati

  2. Jha, Indra Prakash

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  3. Jiang, Jing

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  4. Jin, Jian

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  5. Juliano, Celina E.

K

  1. Khoueiry, Pierre

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  2. Krzak, Monika

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  3. Kumar, Vibhor

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

L

  1. Ladurner, Peter

  2. Li, Yuzhuo

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  3. Lin, Xiang

    • Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning Genome Res. February 2023 33: 232-246; Published in Advance February 27, 2023, doi:10.1101/gr.277068.122

  4. Little, Hannah Morris

M

  1. Macfarlan, Todd S.

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

  2. Martin-Trujillo, Alejandro

  3. Matarazzo, Maria R.

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  4. Mishra, Shreya

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  5. Moreland, R. Travis

  6. Morone, Barbara

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

N

  1. Natarajan, Kedar Nath

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  2. Nekrutenko, Anton

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

  3. Nichols, Ruth V.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  4. Nishida, Andrew

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

O

  1. O'Connell, Brendan L.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

P

  1. Pandey, Neetesh

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  2. Patel, Nihir

  3. Pokholok, Dmitry

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  4. Poondi Krishnan, Varsha

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  5. Primack, Abby S.

Q

  1. Quan, Hui

R

  1. Rasche, Helena

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

S

  1. Saab, Raya

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  2. Schnitzler, Christine E.

  3. Selig, Sara

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  4. SenGupta, Debarka

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  5. Sharma, Madhu

    • Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis Genome Res. February 2023 33: 218-231; Published in Advance January 18, 2023, doi:10.1101/gr.277015.122

  6. Sharp, Andrew J.

  7. Siebert, Stefan

  8. Simakov, Oleg

  9. Singh, Sumeeta

  10. Soranzo, Nicola

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

  11. Steemers, Frank J.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  12. Strazzullo, Maria

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

  13. Sun, Ming-an

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

T

  1. Thomas, Jerushah

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  2. Thornton, Casey A.

    • Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing Genome Res. February 2023 33: 208-217; Published in Advance February 15, 2023, doi:10.1101/gr.276655.122
      OPEN ACCESS ARTICLE

  3. Tian, Tian

    • Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning Genome Res. February 2023 33: 232-246; Published in Advance February 27, 2023, doi:10.1101/gr.277068.122

  4. Toubiana, Shir

    • The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Genome Res. February 2023 33: 169-183; Published in Advance February 24, 2023, doi:10.1101/gr.276986.122

V

  1. van den Beek, Marius

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond Genome Res. February 2023 33: 261-268; Published in Advance February 24, 2023, doi:10.1101/gr.276963.122
      OPEN ACCESS ARTICLE

W

  1. Wang, Jingyao

  2. Wei, Zhi

    • Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning Genome Res. February 2023 33: 232-246; Published in Advance February 27, 2023, doi:10.1101/gr.277068.122

  3. Wolfsberg, Tyra G.

X

  1. Xue, Yue

Y

  1. Yu, Miao

    • Regulation of endogenous retrovirus–derived regulatory elements by GATA2/3 and MSX2 in human trophoblast stem cells Genome Res. February 2023 33: 197-207; Published in Advance February 17, 2023, doi:10.1101/gr.277150.122

Z

  1. Zacksenhaus, Eldad

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  2. Zalzali, Hasan

    • A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements Genome Res. February 2023 33: 269-282; Published in Advance January 17, 2023, doi:10.1101/gr.277037.122

  3. Zhang, Jun

  4. Zhang, Suiyuan

  5. Zhong, Cheng

    • Complex hierarchical structures in single-cell genomics data unveiled by deep hyperbolic manifold learning Genome Res. February 2023 33: 232-246; Published in Advance February 27, 2023, doi:10.1101/gr.277068.122

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