Volume 33, Issue 12 | December 2023

Research
- - Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall
    William T. Harvey
    Peter Ebert
    Jana Ebler
    Peter A. Audano
    Katherine M. Munson
    Kendra Hoekzema David Porubsky
    ...[+2 authors]...,
    Christine R. Beck
    Tobias Marschall
    Kiran Garimella
    Evan E. Eichler
    First Published December 7, 2023
  - A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns
    Yan Feng
    Zhiqiang Zhang
    Yuyang Hong
    Yi Ding
    Leiqin Liu
    First Published November 8, 2023
  - A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates
    Alexandra M. Stendahl
    Rashesh Sanghvi
    Samuel Peterson
    Karina Ray
    Ana C. Lima
    First Published November 20, 2023
  - De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression
    Mark E. Gill
    Alexia Rohmer
    Serap Erkek-Ozhan
    Ching-Yeu Liang
    Sunwoo Chun
    First Published December 21, 2023
  - Revisiting chromatin packaging in mouse sperm
    Qiangzong Yin
    Chih-Hsiang Yang
    Olga S. Strelkova
    Jingyi Wu
    Yu Sun
    Sneha Gopalan Liyan Yang Job Dekker
    ...[+3 authors]...,
    Thomas G. Fazzio
    Xin Zhiguo Li
    Johan Gibcus
    Oliver J. Rando
    First Published December 21, 2023
  - Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei
    Gregor Jessberger
    Csilla Várnai
    Roman R. Stocsits
    Wen Tang
    Georg Stary
    First Published December 21, 2023
  - Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase
    Boning Chen
    Heather K. MacAlpine
    Alexander J. Hartemink
    David M. MacAlpine
    First Published December 11, 2023
  - tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis
    Junling Shi
    Jiaqi Xu
    Jun Ma
    Feng He
    First Published November 16, 2023
  - Evidence for selfing in a vertebrate from whole-genome sequencing
    Astrid Böhne
    Zeynep Oğuzhan
    Ioannis Chrysostomakis
    Simon Vitt
    Denis Meuthen
    First Published December 7, 2023
Methods
- - Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome
    Ju Heon Maeng
    H. Josh Jang
    Alan Y. Du
    Shin-Cheng Tzeng
    Ting Wang
    First Published December 8, 2023
  - Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases
    Prashant S. Emani
    Maya N. Geradi
    Gamze Gürsoy
    Monica R. Grasty
    Andrew Miranker
    First Published December 14, 2023
Reviewer Index
- - Reviewer Index, Volume 33, 2023
    First Published December 27, 2023

Table of Contents

Volume 33, Issue 12 | December 2023

Research

Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall

A DNA methylation haplotype block landscape in human tissues and preimplantation embryos reveals regulatory elements defined by comethylation patterns

A naturally occurring variant of MBD4 causes maternal germline hypermutation in primates

De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression

Revisiting chromatin packaging in mouse sperm

Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei

Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase

tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis

Evidence for selfing in a vertebrate from whole-genome sequencing

Methods

Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Reviewer Index

Reviewer Index, Volume 33, 2023

Table of Contents

Volume 33, Issue 12 | December 2023

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Research

Methods

Reviewer Index