Volume 33, Issue 1 | January 2023

Research
- - Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries
    Zubairul Islam
    Bharath Saravanan
    Kaivalya Walavalkar
    Umer Farooq
    Anurag Kumar Singh
    Sabarinathan Radhakrishnan
    ...[+1 authors]...,
    Jitendra Thakur
    Awadhesh Pandit
    Steven Henikoff
    Dimple Notani
    First Published January 17, 2023
  - Multi-omics analyses demonstrate a critical role for EHMT1 methyltransferase in transcriptional repression during oogenesis
    Hannah Demond
    Courtney W. Hanna
    Juan Castillo-Fernandez
    Fátima Santos
    Evangelia K. Papachristou
    Anne Segonds-Pichon
    ...[+1 authors]...,
    Kamal Kishore
    Simon Andrews
    Clive S. D'Santos
    Gavin Kelsey
    First Published January 23, 2023
  - Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
    Peter O. Mulhair
    Liam Crowley
    Douglas H. Boyes
    Amber Harper
    Owen T. Lewis
    Peter W.H. Holland Mark Blaxter Nova Mieszkowska Federica Di Palma Peter Holland Richard Durbin Thomas Richards Matthew Berriman Paul Kersey Peter Hollingsworth Willie Wilson Alex Twyford Ester Gaya Mara Lawniczak Owen Lewis Gavin Broad
    ...[+16 authors]...,
    Kevin Howe
    Michelle Hart
    Paul Flicek
    Ian Barnes
    First Published December 8, 2022
  - Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
    Eugenio López-Cortegano
    Rory J. Craig
    Jobran Chebib
    Eniolaye J. Balogun
    Peter D. Keightley
    First Published December 12, 2022
Methods
- - An efficient genotyper and star-allele caller for pharmacogenomics
    Ananth Hari
    Qinghui Zhou
    Nina Gonzaludo
    John Harting
    Stuart A. Scott
    First Published January 19, 2023
  - A somatic hypermutation–based machine learning model stratifies individuals with Crohn's disease and controls
    Modi Safra
    Lael Werner
    Ayelet Peres
    Pazit Polak
    Naomi Salamon
    Michael Schvimer
    ...[+1 authors]...,
    Batia Weiss
    Iris Barshack
    Dror S. Shouval
    Gur Yaari
    First Published December 16, 2022
  - Marker-free characterization of full-length transcriptomes of single live circulating tumor cells
    Sarita Poonia
    Anurag Goel
    Smriti Chawla
    Namrata Bhattacharya
    Priyadarshini Rai
    Yi Fang Lee Yoon Sim Yap Jay West Ali Asgar Bhagat Juhi Tayal Anurag Mehta
    ...[+6 authors]...,
    Gaurav Ahuja
    Angshul Majumdar
    Naveen Ramalingam
    Debarka Sengupta
    First Published November 22, 2022
  - Cross-species cell-type assignment from single-cell RNA-seq data by a heterogeneous graph neural network
    Xingyan Liu
    Qunlun Shen
    Shihua Zhang
    First Published December 16, 2022
  - Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis
    Alejandro Ceron-Noriega
    Miguel V. Almeida
    Michal Levin
    Falk Butter
    First Published January 18, 2023
  - Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe
    Gerry Tonkin-Hill
    Rebecca A. Gladstone
    Anna K. Pöntinen
    Sergio Arredondo-Alonso
    Stephen D. Bentley
    First Published January 20, 2023
Resources
- - Dynamic regulation of gonadal transposon control across the lifespan of the naturally short-lived African turquoise killifish
    Bryan B. Teefy
    Ari Adler
    Alan Xu
    Katelyn Hsu
    Param Priya Singh
    First Published December 28, 2022
  - Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements
    Tatiana Maroilley
    Stephane Flibotte
    Francesca Jean
    Victoria Rodrigues Alves Barbosa
    Andrew Galbraith
    Afiya Razia Chida Filip Cotra Xiao Li
    ...[+3 authors]...,
    Larisa Oncea
    Mark Edgley
    Don Moerman
    Maja Tarailo-Graovac
    First Published December 5, 2022

Table of Contents

Volume 33, Issue 1 | January 2023

Research

Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries

Multi-omics analyses demonstrate a critical role for EHMT1 methyltransferase in transcriptional repression during oogenesis

Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera

Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii

Methods

An efficient genotyper and star-allele caller for pharmacogenomics

A somatic hypermutation–based machine learning model stratifies individuals with Crohn's disease and controls

Marker-free characterization of full-length transcriptomes of single live circulating tumor cells

Cross-species cell-type assignment from single-cell RNA-seq data by a heterogeneous graph neural network

Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

Resources

Dynamic regulation of gonadal transposon control across the lifespan of the naturally short-lived African turquoise killifish

Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

Table of Contents

Volume 33, Issue 1 | January 2023

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Research

Methods

Resources