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  HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations

  • Naama Hirsch,
  • Idit Dahan,
  • Eva D'haene,
  • Matan Avni,
  • Sarah Vergult,
  • Marta Vidal-García,
  • Pamela Magini,
  • Claudio Graziano,
  • Giulia Severi,
  • Elena Bonora,
  • Anna Maria Nardone,
  • Francesco Brancati,
  • Alberto Fernández-Jaén,
  • Olson J. Rory,
  • Benedikt Hallgrímsson,
  • and Ramon Y. Birnbaum

  Genome Res. July 2022 32: 1242-1253; Published in Advance June 16, 2022, doi:10.1101/gr.276196.121
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  Extensive protein dosage compensation in aneuploid human cancers

  • Klaske M. Schukken and
  • Jason M. Sheltzer

  Genome Res. July 2022 32: 1254-1270; Published in Advance June 14, 2022, doi:10.1101/gr.276378.121
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  Compartment-specific and ELAVL1-coordinated regulation of intronic polyadenylation isoforms by doxorubicin

  • Alina Chakraborty,
  • Mandy Cadix,
  • Sébastien Relier,
  • Nicolò Taricco,
  • Tina Alaeitabar,
  • Alexandre Devaux,
  • Céline M. Labbé,
  • Sylvain Martineau,
  • Amélie Heneman-Masurel,
  • Pierre Gestraud,
  • Alberto Inga,
  • Nicolas Servant,
  • Stéphan Vagner,
  • and Martin Dutertre

  Genome Res. July 2022 32: 1271-1284; Published in Advance July 20, 2022, doi:10.1101/gr.276192.121
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  Cell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells

  • Bingxiang Xu,
  • Xiaomeng Gao,
  • Xiaoli Li,
  • Yan Jia,
  • Feifei Li,
  • and Zhihua Zhang

  Genome Res. July 2022 32: 1285-1297; Published in Advance July 14, 2022, doi:10.1101/gr.276554.122
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  Somatic retrotransposition in the developing rhesus macaque brain

  • Victor Billon,
  • Francisco J. Sanchez-Luque,
  • Jay Rasmussen,
  • Gabriela O. Bodea,
  • Daniel J. Gerhardt,
  • Patricia Gerdes,
  • Seth W. Cheetham,
  • Stephanie N. Schauer,
  • Prabha Ajjikuttira,
  • Thomas J. Meyer,
  • Cora E. Layman,
  • Kimberly A. Nevonen,
  • Natasha Jansz,
  • Jose L. Garcia-Perez,
  • Sandra R. Richardson,
  • Adam D. Ewing,
  • Lucia Carbone,
  • and Geoffrey J. Faulkner

  Genome Res. July 2022 32: 1298-1314; Published in Advance June 21, 2022, doi:10.1101/gr.276451.121
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  Multiple Pristionchus pacificus genomes reveal distinct evolutionary dynamics between de novo candidates and duplicated genes

  • Neel Prabh and
  • Christian Rödelsperger

  Genome Res. July 2022 32: 1315-1327; Published in Advance May 26, 2022, doi:10.1101/gr.276431.121
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  Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes

  • Mohamed Belhocine,
  • Mathieu Simonin,
  • José David Abad Flores,
  • Agata Cieslak,
  • Iris Manosalva,
  • Lydie Pradel,
  • Charlotte Smith,
  • Eve-Lyne Mathieu,
  • Guillaume Charbonnier,
  • Joost H.A. Martens,
  • Hendrik G. Stunnenberg,
  • Muhammad Ahmad Maqbool,
  • Aneta Mikulasova,
  • Lisa J. Russell,
  • Daniel Rico,
  • Denis Puthier,
  • Pierre Ferrier,
  • Vahid Asnafi,
  • and Salvatore Spicuglia

  Genome Res. July 2022 32: 1328-1342; Published in Advance June 23, 2021, doi:10.1101/gr.266924.120
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  Epigenomic translocation of H3K4me3 broad domains over oncogenes following hijacking of super-enhancers

  • Aneta Mikulasova,
  • Daniel Kent,
  • Marco Trevisan-Herraz,
  • Nefeli Karataraki,
  • Kent T.M. Fung,
  • Cody Ashby,
  • Agata Cieslak,
  • Shmuel Yaccoby,
  • Frits van Rhee,
  • Maurizio Zangari,
  • Sharmilan Thanendrarajan,
  • Carolina Schinke,
  • Gareth J. Morgan,
  • Vahid Asnafi,
  • Salvatore Spicuglia,
  • Chris A. Brackley,
  • Anne E. Corcoran,
  • Sophie Hambleton,
  • Brian A. Walker,
  • Daniel Rico,
  • and Lisa J. Russell

  Genome Res. July 2022 32: 1343-1354; Published in Advance December 21, 2021, doi:10.1101/gr.276042.121
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