Volume 27, Issue 7 | July 2017

Research
- - Mechanisms of precise genome editing using oligonucleotide donors
    Yinan Kan
    Brian Ruis
    Taylor Takasugi
    Eric A. Hendrickson
    First Published March 29, 2017
  - Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers
    Yumeng Wang
    Xiaoyan Xu
    Shuangxing Yu
    Kang Jin Jeong
    Zhicheng Zhou
    Leng Han Yiu Huen Tsang Jun Li Hu Chen Lingegowda S. Mangala Yuan Yuan A. Karina Eterovic Yiling Lu
    ...[+8 authors]...,
    Anil K. Sood
    Kenneth L. Scott
    Gordon B. Mills
    Han Liang
    First Published April 14, 2017
  - Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments
    Michael I. Robson
    Jose I. de las Heras
    Rafal Czapiewski
    Aishwarya Sivakumar
    Alastair R.W. Kerr
    First Published April 19, 2017
  - YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
    Jonathan A. Beagan
    Michael T. Duong
    Katelyn R. Titus
    Linda Zhou
    Zhendong Cao
    First Published May 23, 2017
  - Clustering of Drosophila housekeeping promoters facilitates their expression
    Marc Corrales
    Aránzazu Rosado
    Ruggero Cortini
    Joris van Arensbergen
    Bas van Steensel
    First Published April 18, 2017
  - Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
    Xiuli Bi
    Ying-Juan Cheng
    Bo Hu
    Xiaoli Ma
    Rui Wu
    First Published April 6, 2017
  - Accumulation of RNA on chromatin disrupts heterochromatic silencing
    Cornelia Brönner
    Luca Salvi
    Manuel Zocco
    Ilaria Ugolini
    Mario Halic
    First Published April 12, 2017
  - Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition
    Vladimir Despic
    Mario Dejung
    Mengting Gu
    Jayanth Krishnan
    Jing Zhang
    Lydia Herzel
    ...[+1 authors]...,
    Korinna Straube
    Mark B. Gerstein
    Falk Butter
    Karla M. Neugebauer
    First Published April 5, 2017
  - Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha
    James M. Davison
    Colin R. Lickwar
    Lingyun Song
    Ghislain Breton
    Gregory E. Crawford
    First Published April 6, 2017
  - Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans
    Christopher A. Desjardins
    Charles Giamberardino
    Sean M. Sykes
    Chen-Hsin Yu
    Jennifer L. Tenor
    Yuan Chen Timothy Yang Alexander M. Jones Sheng Sun Miriam R. Haverkamp
    ...[+5 authors]...,
    Joseph Heitman
    Anastasia P. Litvintseva
    John R. Perfect
    Christina A. Cuomo
    First Published June 13, 2017
  - Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
    James Hadfield
    Simon R. Harris
    Helena M.B. Seth-Smith
    Surendra Parmar
    Patiyan Andersson
    Philip M. Giffard Julius Schachter Jeanne Moncada Louise Ellison María Lucía Gallo Vaulet Marcelo Rodríguez Fermepin Frans Radebe Suyapa Mendoza Sander Ouburg Servaas A. Morré Konrad Sachse Mirja Puolakkainen Suvi J. Korhonen Chris Sonnex Rebecca Wiggins Hamid Jalal Tamara Brunelli Patrizia Casprini Rachel Pitt Cathy Ison Alevtina Savicheva Elena Shipitsyna Ronza Hadad Laszlo Kari Matthew J. Burton David Mabey Anthony W. Solomon David Lewis Peter Marsh
    ...[+29 authors]...,
    Magnus Unemo
    Ian N. Clarke
    Julian Parkhill
    Nicholas R. Thomson
    First Published June 6, 2017
Methods
- - Extending the spectrum of DNA sequences retrieved from ancient bones and teeth
    Isabelle Glocke
    Matthias Meyer
    First Published April 13, 2017
  - Genome-wide TOP2A DNA cleavage is biased toward translocated and highly transcribed loci
    Xiang Yu
    James W. Davenport
    Karen A. Urtishak
    Marie L. Carillo
    Sager J. Gosai
    Christos P. Kolaris Jo Ann W. Byl
    ...[+2 authors]...,
    Eric F. Rappaport
    Neil Osheroff
    Brian D. Gregory
    Carolyn A. Felix
    First Published April 6, 2017
  - Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
    Sushmita Roy
    Rupa Sridharan
    First Published April 19, 2017
  - Increased taxon sampling reveals thousands of hidden orthologs in flatworms
    José M. Martín-Durán
    Joseph F. Ryan
    Bruno C. Vellutini
    Kevin Pang
    Andreas Hejnol
    First Published April 11, 2017
Resource
- - The developmental proteome of Drosophila melanogaster
    Nuria Casas-Vila
    Alina Bluhm
    Sergi Sayols
    Nadja Dinges
    Mario Dejung
    Tina Altenhein
    ...[+1 authors]...,
    Dennis Kappei
    Benjamin Altenhein
    Jean-Yves Roignant
    Falk Butter
    First Published April 5, 2017

Table of Contents

Volume 27, Issue 7 | July 2017

Research

Mechanisms of precise genome editing using oligonucleotide donors

Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers

Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments

YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

Clustering of Drosophila housekeeping promoters facilitates their expression

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery

Accumulation of RNA on chromatin disrupts heterochromatic silencing

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

Methods

Extending the spectrum of DNA sequences retrieved from ancient bones and teeth

Genome-wide TOP2A DNA cleavage is biased toward translocated and highly transcribed loci

Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes

Increased taxon sampling reveals thousands of hidden orthologs in flatworms

Resource

The developmental proteome of Drosophila melanogaster

Table of Contents

Volume 27, Issue 7 | July 2017

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Research

Methods

Resource