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  Mechanisms of precise genome editing using oligonucleotide donors

  • Yinan Kan,
  • Brian Ruis,
  • Taylor Takasugi,
  • and Eric A. Hendrickson

  Genome Res. July 2017 27: 1099-1111; Published in Advance March 29, 2017, doi:10.1101/gr.214775.116
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  Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers

  • Yumeng Wang,
  • Xiaoyan Xu,
  • Shuangxing Yu,
  • Kang Jin Jeong,
  • Zhicheng Zhou,
  • Leng Han,
  • Yiu Huen Tsang,
  • Jun Li,
  • Hu Chen,
  • Lingegowda S. Mangala,
  • Yuan Yuan,
  • A. Karina Eterovic,
  • Yiling Lu,
  • Anil K. Sood,
  • Kenneth L. Scott,
  • Gordon B. Mills,
  • and Han Liang

  Genome Res. July 2017 27: 1112-1125; Published in Advance April 14, 2017, doi:10.1101/gr.219741.116
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  Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments

  • Michael I. Robson,
  • Jose I. de las Heras,
  • Rafal Czapiewski,
  • Aishwarya Sivakumar,
  • Alastair R.W. Kerr,
  • and Eric C. Schirmer

  Genome Res. July 2017 27: 1126-1138; Published in Advance April 19, 2017, doi:10.1101/gr.212308.116
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  YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

  • Jonathan A. Beagan,
  • Michael T. Duong,
  • Katelyn R. Titus,
  • Linda Zhou,
  • Zhendong Cao,
  • Jingjing Ma,
  • Caroline V. Lachanski,
  • Daniel R. Gillis,
  • and Jennifer E. Phillips-Cremins

  Genome Res. July 2017 27: 1139-1152; Published in Advance May 23, 2017, doi:10.1101/gr.215160.116
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  Clustering of Drosophila housekeeping promoters facilitates their expression

  • Marc Corrales,
  • Aránzazu Rosado,
  • Ruggero Cortini,
  • Joris van Arensbergen,
  • Bas van Steensel,
  • and Guillaume J. Filion

  Genome Res. July 2017 27: 1153-1161; Published in Advance April 18, 2017, doi:10.1101/gr.211433.116
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  Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery

  • Xiuli Bi,
  • Ying-Juan Cheng,
  • Bo Hu,
  • Xiaoli Ma,
  • Rui Wu,
  • Jia-Wei Wang,
  • and Chang Liu

  Genome Res. July 2017 27: 1162-1173; Published in Advance April 6, 2017, doi:10.1101/gr.215186.116
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  Accumulation of RNA on chromatin disrupts heterochromatic silencing

  • Cornelia Brönner,
  • Luca Salvi,
  • Manuel Zocco,
  • Ilaria Ugolini,
  • and Mario Halic

  Genome Res. July 2017 27: 1174-1183; Published in Advance April 12, 2017, doi:10.1101/gr.216986.116
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  Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • Vladimir Despic,
  • Mario Dejung,
  • Mengting Gu,
  • Jayanth Krishnan,
  • Jing Zhang,
  • Lydia Herzel,
  • Korinna Straube,
  • Mark B. Gerstein,
  • Falk Butter,
  • and Karla M. Neugebauer

  Genome Res. July 2017 27: 1184-1194; Published in Advance April 5, 2017, doi:10.1101/gr.215954.116
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  Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

  • James M. Davison,
  • Colin R. Lickwar,
  • Lingyun Song,
  • Ghislain Breton,
  • Gregory E. Crawford,
  • and John F. Rawls

  Genome Res. July 2017 27: 1195-1206; Published in Advance April 6, 2017, doi:10.1101/gr.220111.116
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  Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans

  • Christopher A. Desjardins,
  • Charles Giamberardino,
  • Sean M. Sykes,
  • Chen-Hsin Yu,
  • Jennifer L. Tenor,
  • Yuan Chen,
  • Timothy Yang,
  • Alexander M. Jones,
  • Sheng Sun,
  • Miriam R. Haverkamp,
  • Joseph Heitman,
  • Anastasia P. Litvintseva,
  • John R. Perfect,
  • and Christina A. Cuomo

  Genome Res. July 2017 27: 1207-1219; Published in Advance June 13, 2017, doi:10.1101/gr.218727.116
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  Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

  • James Hadfield,
  • Simon R. Harris,
  • Helena M.B. Seth-Smith,
  • Surendra Parmar,
  • Patiyan Andersson,
  • Philip M. Giffard,
  • Julius Schachter,
  • Jeanne Moncada,
  • Louise Ellison,
  • María Lucía Gallo Vaulet,
  • Marcelo Rodríguez Fermepin,
  • Frans Radebe,
  • Suyapa Mendoza,
  • Sander Ouburg,
  • Servaas A. Morré,
  • Konrad Sachse,
  • Mirja Puolakkainen,
  • Suvi J. Korhonen,
  • Chris Sonnex,
  • Rebecca Wiggins,
  • Hamid Jalal,
  • Tamara Brunelli,
  • Patrizia Casprini,
  • Rachel Pitt,
  • Cathy Ison,
  • Alevtina Savicheva,
  • Elena Shipitsyna,
  • Ronza Hadad,
  • Laszlo Kari,
  • Matthew J. Burton,
  • David Mabey,
  • Anthony W. Solomon,
  • David Lewis,
  • Peter Marsh,
  • Magnus Unemo,
  • Ian N. Clarke,
  • Julian Parkhill,
  • and Nicholas R. Thomson

  Genome Res. July 2017 27: 1220-1229; Published in Advance June 6, 2017, doi:10.1101/gr.212647.116
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