Volume 27, Issue 3 | March 2017

Research
- - Engineered LINE-1 retrotransposition in nondividing human neurons
    Angela Macia
    Thomas J. Widmann
    Sara R. Heras
    Veronica Ayllon
    Laura Sanchez
    Meriem Benkaddour-Boumzaouad Martin Muñoz-Lopez Alejandro Rubio Suyapa Amador-Cubero Eva Blanco-Jimenez Javier Garcia-Castro Pablo Menendez
    ...[+7 authors]...,
    Philip Ng
    Alysson R. Muotri
    John L. Goodier
    Jose L. Garcia-Perez
    First Published December 13, 2016
  - Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface
    Mihaela Pavličev
    Günter P. Wagner
    Arun Rajendra Chavan
    Kathryn Owens
    Jamie Maziarz
    First Published February 7, 2017
  - Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
    Amit Blumberg
    Edward J. Rice
    Anshul Kundaje
    Charles G. Danko
    Dan Mishmar
    First Published January 3, 2017
  - Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation
    Christine Roden
    Jonathan Gaillard
    Shaveta Kanoria
    William Rennie
    Syndi Barish
    Jijun Cheng Wen Pan
    ...[+2 authors]...,
    Jun Liu
    Chris Cotsapas
    Ye Ding
    Jun Lu
    First Published January 13, 2017
  - Evolution of transcript modification by N6-methyladenosine in primates
    Lijia Ma
    Boxuan Zhao
    Kai Chen
    Amber Thomas
    Jigyasa H. Tuteja
    First Published January 4, 2017
  - TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code
    Modi Safra
    Ronit Nir
    Daneyal Farouq
    Ilya Vainberg Slutskin
    Schraga Schwartz
    First Published January 10, 2017
  - A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
    Naoto Imamachi
    Kazi Abdus Salam
    Yutaka Suzuki
    Nobuyoshi Akimitsu
    First Published December 9, 2016
  - Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration
    Kyoungmi Kim
    Sung Wook Park
    Jin Hyoung Kim
    Seung Hwan Lee
    Daesik Kim
    First Published February 16, 2017
  - Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response
    Ido Goldstein
    Songjoon Baek
    Diego M. Presman
    Ville Paakinaho
    Erin E. Swinstead
    First Published December 28, 2016
  - Genome-wide analysis of differential RNA editing in epilepsy
    Prashant Kumar Srivastava
    Marta Bagnati
    Andree Delahaye-Duriez
    Jeong-Hun Ko
    Maxime Rotival
    Sarah R. Langley Kirill Shkura Manuela Mazzuferi Bénédicte Danis Jonathan van Eyll Patrik Foerch
    ...[+6 authors]...,
    Jacques Behmoaras
    Rafal M. Kaminski
    Enrico Petretto
    Michael R. Johnson
    First Published March 1, 2017
  - Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types
    Santiago J. Carmona
    Sarah A. Teichmann
    Lauren Ferreira
    Iain C. Macaulay
    Michael J.T. Stubbington
    First Published January 13, 2017
  - A-to-I RNA editing promotes developmental stage–specific gene and lncRNA expression
    Boaz Goldstein
    Lily Agranat-Tamir
    Dean Light
    Orna Ben-Naim Zgayer
    Alla Fishman
    First Published December 28, 2016
  - Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence
    Shamoni Maheshwari
    Takayoshi Ishii
    C. Titus Brown
    Andreas Houben
    Luca Comai
    First Published February 21, 2017
Methods
- - Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
    Yinxiu Zhan
    Luca Mariani
    Iros Barozzi
    Edda G. Schulz
    Nils Blüthgen
    First Published January 5, 2017
  - UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
    Tom Smith
    Andreas Heger
    Ian Sudbery
    First Published January 18, 2017
Corrigendum
- - Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators
    David van Dijk
    Eilon Sharon
    Maya Lotan-Pompan
    Adina Weinberger
    Eran Segal
    First Published March 1, 2017

Table of Contents

Volume 27, Issue 3 | March 2017

Research

Engineered LINE-1 retrotransposition in nondividing human neurons

Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation

Evolution of transcript modification by N6-methyladenosine in primates

TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration

Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response

Genome-wide analysis of differential RNA editing in epilepsy

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

A-to-I RNA editing promotes developmental stage–specific gene and lncRNA expression

Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

Methods

Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

Table of Contents

Volume 27, Issue 3 | March 2017

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Research

Methods

Corrigendum