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Research

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  Engineered LINE-1 retrotransposition in nondividing human neurons

  • Angela Macia,
  • Thomas J. Widmann,
  • Sara R. Heras,
  • Veronica Ayllon,
  • Laura Sanchez,
  • Meriem Benkaddour-Boumzaouad,
  • Martin Muñoz-Lopez,
  • Alejandro Rubio,
  • Suyapa Amador-Cubero,
  • Eva Blanco-Jimenez,
  • Javier Garcia-Castro,
  • Pablo Menendez,
  • Philip Ng,
  • Alysson R. Muotri,
  • John L. Goodier,
  • and Jose L. Garcia-Perez

  Genome Res. March 2017 27: 335-348; Published in Advance December 13, 2016, doi:10.1101/gr.206805.116
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  Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface

  • Mihaela Pavličev,
  • Günter P. Wagner,
  • Arun Rajendra Chavan,
  • Kathryn Owens,
  • Jamie Maziarz,
  • Caitlin Dunn-Fletcher,
  • Suhas G. Kallapur,
  • Louis Muglia,
  • and Helen Jones

  Genome Res. March 2017 27: 349-361; Published in Advance February 7, 2017, doi:10.1101/gr.207597.116
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  Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

  • Amit Blumberg,
  • Edward J. Rice,
  • Anshul Kundaje,
  • Charles G. Danko,
  • and Dan Mishmar

  Genome Res. March 2017 27: 362-373; Published in Advance January 3, 2017, doi:10.1101/gr.209924.116
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  Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation

  • Christine Roden,
  • Jonathan Gaillard,
  • Shaveta Kanoria,
  • William Rennie,
  • Syndi Barish,
  • Jijun Cheng,
  • Wen Pan,
  • Jun Liu,
  • Chris Cotsapas,
  • Ye Ding,
  • and Jun Lu

  Genome Res. March 2017 27: 374-384; Published in Advance January 13, 2017, doi:10.1101/gr.208900.116
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  Evolution of transcript modification by N⁶-methyladenosine in primates

  • Lijia Ma,
  • Boxuan Zhao,
  • Kai Chen,
  • Amber Thomas,
  • Jigyasa H. Tuteja,
  • Xin He,
  • Chuan He,
  • and Kevin P. White

  Genome Res. March 2017 27: 385-392; Published in Advance January 4, 2017, doi:10.1101/gr.212563.116
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  TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

  • Modi Safra,
  • Ronit Nir,
  • Daneyal Farouq,
  • Ilya Vainberg Slutskin,
  • and Schraga Schwartz

  Genome Res. March 2017 27: 393-406; Published in Advance January 10, 2017, doi:10.1101/gr.207613.116
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  A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

  • Naoto Imamachi,
  • Kazi Abdus Salam,
  • Yutaka Suzuki,
  • and Nobuyoshi Akimitsu

  Genome Res. March 2017 27: 407-418; Published in Advance December 9, 2016, doi:10.1101/gr.206060.116
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  Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration

  • Kyoungmi Kim,
  • Sung Wook Park,
  • Jin Hyoung Kim,
  • Seung Hwan Lee,
  • Daesik Kim,
  • Taeyoung Koo,
  • Kwang-eun Kim,
  • Jeong Hun Kim,
  • and Jin-Soo Kim

  Genome Res. March 2017 27: 419-426; Published in Advance February 16, 2017, doi:10.1101/gr.219089.116
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  Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response

  • Ido Goldstein,
  • Songjoon Baek,
  • Diego M. Presman,
  • Ville Paakinaho,
  • Erin E. Swinstead,
  • and Gordon L. Hager

  Genome Res. March 2017 27: 427-439; Published in Advance December 28, 2016, doi:10.1101/gr.212175.116
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  Genome-wide analysis of differential RNA editing in epilepsy

  • Prashant Kumar Srivastava,
  • Marta Bagnati,
  • Andree Delahaye-Duriez,
  • Jeong-Hun Ko,
  • Maxime Rotival,
  • Sarah R. Langley,
  • Kirill Shkura,
  • Manuela Mazzuferi,
  • Bénédicte Danis,
  • Jonathan van Eyll,
  • Patrik Foerch,
  • Jacques Behmoaras,
  • Rafal M. Kaminski,
  • Enrico Petretto,
  • and Michael R. Johnson

  Genome Res. March 2017 27: 440-450; doi:10.1101/gr.210740.116
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  Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

  • Santiago J. Carmona,
  • Sarah A. Teichmann,
  • Lauren Ferreira,
  • Iain C. Macaulay,
  • Michael J.T. Stubbington,
  • Ana Cvejic,
  • and David Gfeller

  Genome Res. March 2017 27: 451-461; Published in Advance January 13, 2017, doi:10.1101/gr.207704.116
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  A-to-I RNA editing promotes developmental stage–specific gene and lncRNA expression

  • Boaz Goldstein,
  • Lily Agranat-Tamir,
  • Dean Light,
  • Orna Ben-Naim Zgayer,
  • Alla Fishman,
  • and Ayelet T. Lamm

  Genome Res. March 2017 27: 462-470; Published in Advance December 28, 2016, doi:10.1101/gr.211169.116
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  Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

  • Shamoni Maheshwari,
  • Takayoshi Ishii,
  • C. Titus Brown,
  • Andreas Houben,
  • and Luca Comai

  Genome Res. March 2017 27: 471-478; Published in Advance February 21, 2017, doi:10.1101/gr.214619.116
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