Volume 27, Issue 12 | December 2017

Research
- - Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    Maria Warnefors
    Katharina Mössinger
    Jean Halbert
    Tania Studer
    John L. VandeBerg
    First Published October 27, 2017
  - Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage
    Ray Marin
    Diego Cortez
    Francesco Lamanna
    Madapura M. Pradeepa
    Evgeny Leushkin
    Philippe Julien Angélica Liechti Jean Halbert Thoomke Brüning Katharina Mössinger Timo Trefzer Christian Conrad
    ...[+7 authors]...,
    Halie N. Kerver
    Juli Wade
    Patrick Tschopp
    Henrik Kaessmann
    First Published November 13, 2017
  - Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations
    Zoe June Assaf
    Susanne Tilk
    Jane Park
    Mark L. Siegal
    Dmitri A. Petrov
    First Published October 27, 2017
  - Comparative genome analysis of programmed DNA elimination in nematodes
    Jianbin Wang
    Shenghan Gao
    Yulia Mostovoy
    Yuanyuan Kang
    Maxim Zagoskin
    Yongqiao Sun Bing Zhang Laura K. White Alice Easton Thomas B. Nutman
    ...[+5 authors]...,
    Pui-Yan Kwok
    Songnian Hu
    Martin K. Nielsen
    Richard E. Davis
    First Published November 8, 2017
  - Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences
    Josh T. Cuperus
    Benjamin Groves
    Anna Kuchina
    Alexander B. Rosenberg
    Nebojsa Jojic
    First Published November 2, 2017
Methods
- - A novel approach for data integration and disease subtyping
    Tin Nguyen
    Rebecca Tagett
    Diana Diaz
    Sorin Draghici
    First Published October 24, 2017
  - Rapid molecular assays to study human centromere genomics
    Rafael Contreras-Galindo
    Sabrina Fischer
    Anjan K. Saha
    John D. Lundy
    Patrick W. Cervantes
    Mohamad Mourad Claire Wang Brian Qian Manhong Dai Fan Meng
    ...[+5 authors]...,
    Arul Chinnaiyan
    Gilbert S. Omenn
    Mark H. Kaplan
    David M. Markovitz
    First Published November 15, 2017
  - GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
    Daniel L. Cameron
    Jan Schröder
    Jocelyn Sietsma Penington
    Hongdo Do
    Ramyar Molania
    First Published November 2, 2017
  - Cre-dependent Cas9-expressing pigs enable efficient in vivo genome editing
    Kepin Wang
    Qin Jin
    Degong Ruan
    Yi Yang
    Qishuai Liu
    Han Wu Zhiwei Zhou Zhen Ouyang Zhaoming Liu Yu Zhao Bentian Zhao Quanjun Zhang Jiangyun Peng Chengdan Lai Nana Fan Yanhui Liang Ting Lan Nan Li Xiaoshan Wang Xinlu Wang Yong Fan Pieter A. Doevendans
    ...[+17 authors]...,
    Joost P.G. Sluijter
    Pentao Liu
    Xiaoping Li
    Liangxue Lai
    First Published November 16, 2017
  - Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair
    Ryan J. McGinty
    Rachel G. Rubinstein
    Alexander J. Neil
    Margaret Dominska
    Denis Kiktev
    First Published November 7, 2017
  - An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics
    Ulrich Omasits
    Adithi R. Varadarajan
    Michael Schmid
    Sandra Goetze
    Damianos Melidis
    Marc Bourqui Olga Nikolayeva Maxime Québatte Andrea Patrignani Christoph Dehio
    ...[+5 authors]...,
    Juerg E. Frey
    Mark D. Robinson
    Bernd Wollscheid
    Christian H. Ahrens
    First Published November 15, 2017
Resources
- - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans
    Aaron C. Daugherty
    Robin W. Yeo
    Jason D. Buenrostro
    William J. Greenleaf
    Anshul Kundaje
    First Published November 15, 2017
  - Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq
    Margaret C.W. Ho
    Porfirio Quintero-Cadena
    Paul W. Sternberg
    First Published October 26, 2017
  - Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans
    Nicolas J. Tourasse
    Jonathan R.M. Millet
    Denis Dupuy
    First Published October 31, 2017
Corrigendum
- - Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
    Juan L. Mateo
    Debbie L.C. van den Berg
    Maximilian Haeussler
    Daniela Drechsel
    Zachary B. Gaber
    Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
    ...[+5 authors]...,
    Laurence Ettwiller
    Joachim Wittbrodt
    François Guillemot
    Ben Martynoga
    First Published December 1, 2017
Reviewer Index
- - Reviewer Index, Volume 27, 2017
    First Published December 1, 2017

Table of Contents

Volume 27, Issue 12 | December 2017

Research

Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation

Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage

Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations

Comparative genome analysis of programmed DNA elimination in nematodes

Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences

Methods

A novel approach for data integration and disease subtyping

Rapid molecular assays to study human centromere genomics

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Cre-dependent Cas9-expressing pigs enable efficient in vivo genome editing

Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Resources

Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq

Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans

Corrigendum

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Reviewer Index

Reviewer Index, Volume 27, 2017

Table of Contents

Volume 27, Issue 12 | December 2017

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Research

Methods

Resources

Corrigendum

Reviewer Index