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Table of Contents
October 2016; 26 (10)
Research
Select this article
Genomic variation within alpha satellite DNA influences centromere location on human chromosomes with metastable epialleles
Megan E. Aldrup-MacDonald
,
Molly E. Kuo
,
Lori L. Sullivan
,
Kimberline Chew
,
and
Beth A. Sullivan
Genome Res.
October 2016
26
:
1301
-
1311
;
Published in Advance
August 10, 2016
,
doi:
10.1101/gr.206706.116
Abstract
Full Text
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Pangolin genomes and the evolution of mammalian scales and immunity
Siew Woh Choo
,
Mike Rayko
,
Tze King Tan
,
Ranjeev Hari
,
Aleksey Komissarov
,
Wei Yee Wee
,
Andrey A. Yurchenko
,
Sergey Kliver
,
Gaik Tamazian
,
Agostinho Antunes
,
Richard K. Wilson
,
Wesley C. Warren
,
Klaus-Peter Koepfli
,
Patrick Minx
,
Ksenia Krasheninnikova
,
Antoinette Kotze
,
Desire L. Dalton
,
Elaine Vermaak
,
Ian C. Paterson
,
Pavel Dobrynin
,
Frankie Thomas Sitam
,
Jeffrine J. Rovie-Ryan
,
Warren E. Johnson
,
Aini Mohamed Yusoff
,
Shu-Jin Luo
,
Kayal Vizi Karuppannan
,
Gang Fang
,
Deyou Zheng
,
Mark B. Gerstein
,
Leonard Lipovich
,
Stephen J. O'Brien
,
and
Guat Jah Wong
Genome Res.
October 2016
26
:
1312
-
1322
;
Published in Advance
August 10, 2016
,
doi:
10.1101/gr.203521.115
Abstract
Full Text
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Supplemental Material
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Coding and noncoding variants in
HFM1
,
MLH3
,
MSH4
,
MSH5
,
RNF212
, and
RNF212B
affect recombination rate in cattle
Naveen Kumar Kadri
,
Chad Harland
,
Pierre Faux
,
Nadine Cambisano
,
Latifa Karim
,
Wouter Coppieters
,
Sébastien Fritz
,
Erik Mullaart
,
Denis Baurain
,
Didier Boichard
,
Richard Spelman
,
Carole Charlier
,
Michel Georges
,
and
Tom Druet
Genome Res.
October 2016
26
:
1323
-
1332
;
Published in Advance
August 11, 2016
,
doi:
10.1101/gr.204214.116
Abstract
Full Text
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NGS-based reverse genetic screen for common embryonic lethal mutations compromising fertility in livestock
Carole Charlier
,
Wanbo Li
,
Chad Harland
,
Mathew Littlejohn
,
Wouter Coppieters
,
Frances Creagh
,
Steve Davis
,
Tom Druet
,
Pierre Faux
,
François Guillaume
,
Latifa Karim
,
Mike Keehan
,
Naveen Kumar Kadri
,
Nico Tamma
,
Richard Spelman
,
and
Michel Georges
Genome Res.
October 2016
26
:
1333
-
1341
;
Published in Advance
September 19, 2016
,
doi:
10.1101/gr.207076.116
Abstract
Full Text
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Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation
Geng Chen
,
John Paul Schell
,
Julio Aguila Benitez
,
Sophie Petropoulos
,
Marlene Yilmaz
,
Björn Reinius
,
Zhanna Alekseenko
,
Leming Shi
,
Eva Hedlund
,
Fredrik Lanner
,
Rickard Sandberg
,
and
Qiaolin Deng
Genome Res.
October 2016
26
:
1342
-
1354
;
Published in Advance
August 2, 2016
,
doi:
10.1101/gr.201954.115
Abstract
Full Text
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OPEN ACCESS ARTICLE
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The nonessentiality of essential genes in yeast provides therapeutic insights into a human disease
Piaopiao Chen
,
Dandan Wang
,
Han Chen
,
Zhenzhen Zhou
,
and
Xionglei He
Genome Res.
October 2016
26
:
1355
-
1362
;
Published in Advance
July 20, 2016
,
doi:
10.1101/gr.205955.116
Abstract
Full Text
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Common genomic elements promote transcriptional and DNA replication roadblocks
Kevin Roy
,
Jason Gabunilas
,
Abigail Gillespie
,
Duy Ngo
,
and
Guillaume F. Chanfreau
Genome Res.
October 2016
26
:
1363
-
1375
;
Published in Advance
August 18, 2016
,
doi:
10.1101/gr.204776.116
Abstract
Full Text
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Global genome nucleotide excision repair is organized into domains that promote efficient DNA repair in chromatin
Shirong Yu
,
Katie Evans
,
Patrick van Eijk
,
Mark Bennett
,
Richard M. Webster
,
Matthew Leadbitter
,
Yumin Teng
,
Raymond Waters
,
Stephen P. Jackson
,
and
Simon H. Reed
Genome Res.
October 2016
26
:
1376
-
1387
;
Published in Advance
July 28, 2016
,
doi:
10.1101/gr.209106.116
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
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A decade of genomic history for healthcare-associated
Enterococcus faecium
in the United Kingdom and Ireland
Kathy E. Raven
,
Sandra Reuter
,
Rosy Reynolds
,
Hayley J. Brodrick
,
Julie E. Russell
,
M. Estée Török
,
Julian Parkhill
,
and
Sharon J. Peacock
Genome Res.
October 2016
26
:
1388
-
1396
;
Published in Advance
August 15, 2016
,
doi:
10.1101/gr.204024.116
Abstract
Full Text
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OPEN ACCESS ARTICLE
Methods
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End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data
Alan Derr
,
Chaoxing Yang
,
Rapolas Zilionis
,
Alexey Sergushichev
,
David M. Blodgett
,
Sambra Redick
,
Rita Bortell
,
Jeremy Luban
,
David M. Harlan
,
Sebastian Kadener
,
Dale L. Greiner
,
Allon Klein
,
Maxim N. Artyomov
,
and
Manuel Garber
Genome Res.
October 2016
26
:
1397
-
1410
;
Published in Advance
July 28, 2016
,
doi:
10.1101/gr.207902.116
Abstract
Full Text
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OPEN ACCESS ARTICLE
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Inhibition of microRNA 128 promotes excitability of cultured cortical neuronal networks
K. Melodi McSweeney
,
Ayal B. Gussow
,
Shelton S. Bradrick
,
Sarah A. Dugger
,
Sahar Gelfman
,
Quanli Wang
,
Slavé Petrovski
,
Wayne N. Frankel
,
Michael J. Boland
,
and
David B. Goldstein
Genome Res.
October 2016
26
:
1411
-
1416
;
Published in Advance
August 11, 2016
,
doi:
10.1101/gr.199828.115
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
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Modeling
cis
-regulation with a compendium of genome-wide histone H3K27ac profiles
Su Wang
,
Chongzhi Zang
,
Tengfei Xiao
,
Jingyu Fan
,
Shenglin Mei
,
Qian Qin
,
Qiu Wu
,
Xujuan Li
,
Kexin Xu
,
Housheng Hansen He
,
Myles Brown
,
Clifford A. Meyer
,
and
X. Shirley Liu
Genome Res.
October 2016
26
:
1417
-
1429
;
Published in Advance
July 27, 2016
,
doi:
10.1101/gr.201574.115
Abstract
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A synergistic DNA logic predicts genome-wide chromatin accessibility
Tatsunori Hashimoto
,
Richard I. Sherwood
,
Daniel D. Kang
,
Nisha Rajagopal
,
Amira A. Barkal
,
Haoyang Zeng
,
Bart J.M. Emons
,
Sharanya Srinivasan
,
Tommi Jaakkola
,
and
David K. Gifford
Genome Res.
October 2016
26
:
1430
-
1440
;
Published in Advance
July 25, 2016
,
doi:
10.1101/gr.199778.115
Abstract
Full Text
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Resource
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The time-resolved transcriptome of
C. elegans
Max E. Boeck
,
Chau Huynh
,
Lou Gevirtzman
,
Owen A. Thompson
,
Guilin Wang
,
Dionna M. Kasper
,
Valerie Reinke
,
LaDeana W. Hillier
,
and
Robert H. Waterston
Genome Res.
October 2016
26
:
1441
-
1450
;
Published in Advance
August 16, 2016
,
doi:
10.1101/gr.202663.115
Abstract
Full Text
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Corrigendum
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Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
Arkarachai Fungtammasan
,
Erin Walsh
,
Francesca Chiaromonte
,
Kristin A. Eckert
,
and
Kateryna D. Makova
Genome Res.
October 2016
26
:
1451
;
doi:
10.1101/gr.214460.116
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October 2016;
26
(10)
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