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  Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

  • Kiana Mohajeri,
  • Stuart Cantsilieris,
  • John Huddleston,
  • Bradley J. Nelson,
  • Bradley P. Coe,
  • Catarina D. Campbell,
  • Carl Baker,
  • Lana Harshman,
  • Katherine M. Munson,
  • Zev N. Kronenberg,
  • Milinn Kremitzki,
  • Archana Raja,
  • Claudia Rita Catacchio,
  • Tina A. Graves,
  • Richard K. Wilson,
  • Mario Ventura,
  • and Evan E. Eichler

  Genome Res. November 2016 26: 1453-1467; Published in Advance October 7, 2016, doi:10.1101/gr.211284.116
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  Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia

  • Susanna Teppo,
  • Saara Laukkanen,
  • Thomas Liuksiala,
  • Jessica Nordlund,
  • Mikko Oittinen,
  • Kaisa Teittinen,
  • Toni Grönroos,
  • Pascal St-Onge,
  • Daniel Sinnett,
  • Ann-Christine Syvänen,
  • Matti Nykter,
  • Keijo Viiri,
  • Merja Heinäniemi,
  • and Olli Lohi

  Genome Res. November 2016 26: 1468-1477; Published in Advance September 12, 2016, doi:10.1101/gr.193649.115
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  Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response

  • Petros Kolovos,
  • Theodore Georgomanolis,
  • Anna Koeferle,
  • Joshua D. Larkin,
  • Lilija Brant,
  • Miloš Nikolicć,
  • Eduardo G. Gusmao,
  • Anne Zirkel,
  • Tobias A. Knoch,
  • Wilfred F. van Ijcken,
  • Peter R. Cook,
  • Ivan G. Costa,
  • Frank G. Grosveld,
  • and Argyris Papantonis

  Genome Res. November 2016 26: 1478-1489; Published in Advance September 15, 2016, doi:10.1101/gr.210005.116
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  Imprints and DPPA3 are bypassed during pluripotency- and differentiation-coupled methylation reprogramming in testicular germ cell tumors

  • J. Keith Killian,
  • Lambert C.J. Dorssers,
  • Britton Trabert,
  • Ad J.M. Gillis,
  • Michael B. Cook,
  • Yonghong Wang,
  • Joshua J. Waterfall,
  • Holly Stevenson,
  • William I. Smith, Jr.,
  • Natalia Noyes,
  • Parvathy Retnakumar,
  • J. Hans Stoop,
  • J. Wolter Oosterhuis,
  • Paul S. Meltzer,
  • Katherine A. McGlynn,
  • and Leendert H.J. Looijenga

  Genome Res. November 2016 26: 1490-1504; Published in Advance October 20, 2016, doi:10.1101/gr.201293.115
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  Reconstructed cell fate–regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis

  • Marco-Antonio Mendoza-Parra,
  • Valeriya Malysheva,
  • Mohamed Ashick Mohamed Saleem,
  • Michele Lieb,
  • Aurelie Godel,
  • and Hinrich Gronemeyer

  Genome Res. November 2016 26: 1505-1519; Published in Advance September 20, 2016, doi:10.1101/gr.208926.116
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  DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

  • Steven R. Eichten,
  • Tim Stuart,
  • Akanksha Srivastava,
  • Ryan Lister,
  • and Justin O. Borevitz

  Genome Res. November 2016 26: 1520-1531; Published in Advance September 9, 2016, doi:10.1101/gr.205468.116
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  Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome

  • Sara González,
  • Alicia García,
  • Enrique Vázquez,
  • Rebeca Serrano,
  • Mar Sánchez,
  • Luis Quintales,
  • and Francisco Antequera

  Genome Res. November 2016 26: 1532-1543; Published in Advance September 23, 2016, doi:10.1101/gr.207241.116
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  RNA–DNA sequence differences in Saccharomyces cerevisiae

  • Isabel X. Wang,
  • Christopher Grunseich,
  • Youree G. Chung,
  • Hojoong Kwak,
  • Girish Ramrattan,
  • Zhengwei Zhu,
  • and Vivian G. Cheung

  Genome Res. November 2016 26: 1544-1554; Published in Advance September 16, 2016, doi:10.1101/gr.207878.116
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  Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently

  • Sophia David,
  • Christophe Rusniok,
  • Massimo Mentasti,
  • Laura Gomez-Valero,
  • Simon R. Harris,
  • Pierre Lechat,
  • John Lees,
  • Christophe Ginevra,
  • Philippe Glaser,
  • Laurence Ma,
  • Christiane Bouchier,
  • Anthony Underwood,
  • Sophie Jarraud,
  • Timothy G. Harrison,
  • Julian Parkhill,
  • and Carmen Buchrieser

  Genome Res. November 2016 26: 1555-1564; Published in Advance September 23, 2016, doi:10.1101/gr.209536.116
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