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Research

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  High-throughput sequencing of complete human mtDNA genomes from the Philippines

  • Ellen D. Gunnarsdóttir,
  • Mingkun Li,
  • Marc Bauchet,
  • Knut Finstermeier,
  • and Mark Stoneking

  Genome Res. January 2011 21: 1-11; Published in Advance December 8, 2010, doi:10.1101/gr.107615.110
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  OPA1 links human mitochondrial genome maintenance to mtDNA replication and distribution

  • Ghizlane Elachouri,
  • Sara Vidoni,
  • Claudia Zanna,
  • Alexandre Pattyn,
  • Hassan Boukhaddaoui,
  • Karen Gaget,
  • Patrick Yu-Wai-Man,
  • Giuseppe Gasparre,
  • Emmanuelle Sarzi,
  • Cécile Delettre,
  • Aurélien Olichon,
  • Dominique Loiseau,
  • Pascal Reynier,
  • Patrick F. Chinnery,
  • Agnès Rotig,
  • Valerio Carelli,
  • Christian P. Hamel,
  • Michela Rugolo,
  • and Guy Lenaers

  Genome Res. January 2011 21: 12-20; Published in Advance October 25, 2010, doi:10.1101/gr.108696.110
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  Adaptive selection of an incretin gene in Eurasian populations

  • Chia Lin Chang,
  • James J. Cai,
  • Chiening Lo,
  • Jorge Amigo,
  • Jae-Il Park,
  • and Sheau Yu Teddy Hsu

  Genome Res. January 2011 21: 21-32; Published in Advance October 26, 2010, doi:10.1101/gr.110593.110
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  Observation and prediction of recurrent human translocations mediated by NAHR between nonhomologous chromosomes

  • Zhishuo Ou,
  • Paweł Stankiewicz,
  • Zhilian Xia,
  • Amy M. Breman,
  • Brian Dawson,
  • Joanna Wiszniewska,
  • Przemyslaw Szafranski,
  • M. Lance Cooper,
  • Mitchell Rao,
  • Lina Shao,
  • Sarah T. South,
  • Karlene Coleman,
  • Paul M. Fernhoff,
  • Marcel J. Deray,
  • Sally Rosengren,
  • Elizabeth R. Roeder,
  • Victoria B. Enciso,
  • A. Craig Chinault,
  • Ankita Patel,
  • Sung-Hae L. Kang,
  • Chad A. Shaw,
  • James R. Lupski,
  • and Sau W. Cheung

  Genome Res. January 2011 21: 33-46; doi:10.1101/gr.111609.110
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  Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors

  • Christiane M. Robbins,
  • Waibov A. Tembe,
  • Angela Baker,
  • Shripad Sinari,
  • Tracy Y. Moses,
  • Stephen Beckstrom-Sternberg,
  • James Beckstrom-Sternberg,
  • Michael Barrett,
  • James Long,
  • Arul Chinnaiyan,
  • James Lowey,
  • Edward Suh,
  • John V. Pearson,
  • David W. Craig,
  • David B. Agus,
  • Kenneth J. Pienta,
  • and John D. Carpten

  Genome Res. January 2011 21: 47-55; Published in Advance December 8, 2010, doi:10.1101/gr.107961.110
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  Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing

  • Dorothee Pflueger,
  • Stéphane Terry,
  • Andrea Sboner,
  • Lukas Habegger,
  • Raquel Esgueva,
  • Pei-Chun Lin,
  • Maria A. Svensson,
  • Naoki Kitabayashi,
  • Benjamin J. Moss,
  • Theresa Y. MacDonald,
  • Xuhong Cao,
  • Terrence Barrette,
  • Ashutosh K. Tewari,
  • Mark S. Chee,
  • Arul M. Chinnaiyan,
  • David S. Rickman,
  • Francesca Demichelis,
  • Mark B. Gerstein,
  • and Mark A. Rubin

  Genome Res. January 2011 21: 56-67; Published in Advance October 29, 2010, doi:10.1101/gr.110684.110
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  Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts

  • Christelle Borel,
  • Samuel Deutsch,
  • Audrey Letourneau,
  • Eugenia Migliavacca,
  • Stephen B. Montgomery,
  • Antigone S. Dimas,
  • Charles E. Vejnar,
  • Homa Attar,
  • Maryline Gagnebin,
  • Corinne Gehrig,
  • Emilie Falconnet,
  • Yann Dupré,
  • Emmanouil T. Dermitzakis,
  • and Stylianos E. Antonarakis

  Genome Res. January 2011 21: 68-73; Published in Advance December 8, 2010, doi:10.1101/gr.109371.110
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  Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer

  • Noriomi Matsumura,
  • Zhiqing Huang,
  • Seiichi Mori,
  • Tsukasa Baba,
  • Shingo Fujii,
  • Ikuo Konishi,
  • Edwin S. Iversen,
  • Andrew Berchuck,
  • and Susan K. Murphy

  Genome Res. January 2011 21: 74-82; Published in Advance December 14, 2010, doi:10.1101/gr.108803.110
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  LSH and G9a/GLP complex are required for developmentally programmed DNA methylation

  • Kevin Myant,
  • Ausma Termanis,
  • Arvind Y.M. Sundaram,
  • Tristin Boe,
  • Chao Li,
  • Cara Merusi,
  • Joe Burrage,
  • Jose I. de Las Heras,
  • and Irina Stancheva

  Genome Res. January 2011 21: 83-94; Published in Advance December 13, 2010, doi:10.1101/gr.108498.110
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  Tissue-specific disallowance of housekeeping genes: The other face of cell differentiation

  • Lieven Thorrez,
  • Ilaria Laudadio,
  • Katrijn Van Deun,
  • Roel Quintens,
  • Nico Hendrickx,
  • Mikaela Granvik,
  • Katleen Lemaire,
  • Anica Schraenen,
  • Leentje Van Lommel,
  • Stefan Lehnert,
  • Cristina Aguayo-Mazzucato,
  • Rui Cheng-Xue,
  • Patrick Gilon,
  • Iven Van Mechelen,
  • Susan Bonner-Weir,
  • Frédéric Lemaigre,
  • and Frans Schuit

  Genome Res. January 2011 21: 95-105; Published in Advance November 18, 2010, doi:10.1101/gr.109173.110
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  Copy number variation modifies expression time courses

  • Evelyne Chaignat,
  • Emilie Aït Yahya-Graison,
  • Charlotte N. Henrichsen,
  • Jacqueline Chrast,
  • Frédéric Schütz,
  • Sylvain Pradervand,
  • and Alexandre Reymond

  Genome Res. January 2011 21: 106-113; Published in Advance November 17, 2010, doi:10.1101/gr.112748.110
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  Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps

  • Beth L. Dumont,
  • Michael A. White,
  • Brian Steffy,
  • Tim Wiltshire,
  • and Bret A. Payseur

  Genome Res. January 2011 21: 114-125; Published in Advance October 26, 2010, doi:10.1101/gr.111252.110
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  Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time

  • David T. Pride,
  • Christine L. Sun,
  • Julia Salzman,
  • Nitya Rao,
  • Peter Loomer,
  • Gary C. Armitage,
  • Jillian F. Banfield,
  • and David A. Relman

  Genome Res. January 2011 21: 126-136; Published in Advance December 13, 2010, doi:10.1101/gr.111732.110
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