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  Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

  • Romain A. Studer,
  • Simon Penel,
  • Laurent Duret,
  • and Marc Robinson-Rechavi

  Genome Res. September 2008 18: 1393-1402; Published in Advance June 18, 2008, doi:10.1101/gr.076992.108
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  CpG dinucleotides and the mutation rate of non-CpG DNA

  • Jean-Claude Walser,
  • Loïc Ponger,
  • and Anthony V. Furano

  Genome Res. September 2008 18: 1403-1414; Published in Advance June 11, 2008, doi:10.1101/gr.076455.108
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  A deletion in nephronophthisis 4 (NPHP4) is associated with recessive cone-rod dystrophy in standard wire-haired dachshund

  • Anne Caroline Wiik,
  • Claire Wade,
  • Tara Biagi,
  • Ernst-Otto Ropstad,
  • Ellen Bjerkås,
  • Kerstin Lindblad-Toh,
  • and Frode Lingaas

  Genome Res. September 2008 18: 1415-1421; Published in Advance August 7, 2008, doi:10.1101/gr.074302.107
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  A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity

  • Aileen M. Smith,
  • Maria-Jose Sanchez,
  • George A. Follows,
  • Sarah Kinston,
  • Ian J. Donaldson,
  • Anthony R. Green,
  • and Berthold Göttgens

  Genome Res. September 2008 18: 1422-1432; Published in Advance August 7, 2008, doi:10.1101/gr.077008.108
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  Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

  • Marcel E. Dinger,
  • Paulo P. Amaral,
  • Tim R. Mercer,
  • Ken C. Pang,
  • Stephen J. Bruce,
  • Brooke B. Gardiner,
  • Marjan E. Askarian-Amiri,
  • Kelin Ru,
  • Giulia Soldà,
  • Cas Simons,
  • Susan M. Sunkin,
  • Mark L. Crowe,
  • Sean M. Grimmond,
  • Andrew C. Perkins,
  • and John S. Mattick

  Genome Res. September 2008 18: 1433-1445; Published in Advance June 18, 2008, doi:10.1101/gr.078378.108
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  On the origin of new genes in Drosophila

  • Qi Zhou,
  • Guojie Zhang,
  • Yue Zhang,
  • Shiyu Xu,
  • Ruoping Zhao,
  • Zubing Zhan,
  • Xin Li,
  • Yun Ding,
  • Shuang Yang,
  • and Wen Wang

  Genome Res. September 2008 18: 1446-1455; Published in Advance June 11, 2008, doi:10.1101/gr.076588.108
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  A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

  • Qian-Hao Zhu,
  • Andrew Spriggs,
  • Louisa Matthew,
  • Longjiang Fan,
  • Gavin Kennedy,
  • Frank Gubler,
  • and Chris Helliwell

  Genome Res. September 2008 18: 1456-1465; Published in Advance August 7, 2008, doi:10.1101/gr.075572.107
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  Relaxation of yeast mitochondrial functions after whole-genome duplication

  • Huifeng Jiang,
  • Wenjun Guan,
  • David Pinney,
  • Wen Wang,
  • and Zhenglong Gu

  Genome Res. September 2008 18: 1466-1471; Published in Advance July 30, 2008, doi:10.1101/gr.074674.107
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  Genome sequence of the β-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

  • Claire Amadou,
  • Géraldine Pascal,
  • Sophie Mangenot,
  • Michelle Glew,
  • Cyril Bontemps,
  • Delphine Capela,
  • Sébastien Carrère,
  • Stéphane Cruveiller,
  • Carole Dossat,
  • Aurélie Lajus,
  • Marta Marchetti,
  • Véréna Poinsot,
  • Zoé Rouy,
  • Bertrand Servin,
  • Maged Saad,
  • Chantal Schenowitz,
  • Valérie Barbe,
  • Jacques Batut,
  • Claudine Médigue,
  • and Catherine Masson-Boivin

  Genome Res. September 2008 18: 1472-1483; Published in Advance May 19, 2008, doi:10.1101/gr.076448.108
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  Very small mobile repeated elements in cyanobacterial genomes

  • Jeff Elhai,
  • Michiko Kato,
  • Sarah Cousins,
  • Peter Lindblad,
  • and José Luis Costa

  Genome Res. September 2008 18: 1484-1499; Published in Advance July 3, 2008, doi:10.1101/gr.074336.107
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  Impacts of protein–protein interaction domains on organism and network complexity

  • Kai Xia,
  • Zheng Fu,
  • Lei Hou,
  • and Jing-Dong J. Han

  Genome Res. September 2008 18: 1500-1508; Published in Advance August 7, 2008, doi:10.1101/gr.068130.107
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