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  Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

  • Albino Bacolla,
  • Jacquelynn E. Larson,
  • Jack R. Collins,
  • Jian Li,
  • Aleksandar Milosavljevic,
  • Peter D. Stenson,
  • David N. Cooper,
  • and Robert D. Wells

  Genome Res. October 2008 18: 1545-1553; Published in Advance August 7, 2008, doi:10.1101/gr.078303.108
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  Nucleosome positioning in human HOX gene clusters

  • Peter V. Kharchenko,
  • Caroline J. Woo,
  • Michael Y. Tolstorukov,
  • Robert E. Kingston,
  • and Peter J. Park

  Genome Res. October 2008 18: 1554-1561; Published in Advance August 22, 2008, doi:10.1101/gr.075952.107
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  Global organization of replication time zones of the mouse genome

  • Shlomit Farkash-Amar,
  • Doron Lipson,
  • Andreas Polten,
  • Alon Goren,
  • Charles Helmstetter,
  • Zohar Yakhini,
  • and Itamar Simon

  Genome Res. October 2008 18: 1562-1570; Published in Advance July 30, 2008, doi:10.1101/gr.079566.108
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  Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5′-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes

  • Jeffrey G. Reid,
  • Ankur K. Nagaraja,
  • Francis C. Lynn,
  • Rafal B. Drabek,
  • Donna M. Muzny,
  • Chad A. Shaw,
  • Michelle K. Weiss,
  • Arash O. Naghavi,
  • Mahjabeen Khan,
  • Huifeng Zhu,
  • Jayantha Tennakoon,
  • Gemunu H. Gunaratne,
  • David B. Corry,
  • Jonathan Miller,
  • Michael T. McManus,
  • Michael S. German,
  • Richard A. Gibbs,
  • Martin M. Matzuk,
  • and Preethi H. Gunaratne

  Genome Res. October 2008 18: 1571-1581; Published in Advance July 9, 2008, doi:10.1101/gr.078246.108
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  Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement

  • Andrew L. Hufton,
  • Detlef Groth,
  • Martin Vingron,
  • Hans Lehrach,
  • Albert J. Poustka,
  • and Georgia Panopoulou

  Genome Res. October 2008 18: 1582-1591; Published in Advance July 14, 2008, doi:10.1101/gr.080119.108
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  Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster

  • Alisha K. Holloway,
  • David J. Begun,
  • Adam Siepel,
  • and Katherine S. Pollard

  Genome Res. October 2008 18: 1592-1601; Published in Advance June 26, 2008, doi:10.1101/gr.077131.108
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  Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

  • Simon Moxon,
  • Runchun Jing,
  • Gyorgy Szittya,
  • Frank Schwach,
  • Rachel L. Rusholme Pilcher,
  • Vincent Moulton,
  • and Tamas Dalmay

  Genome Res. October 2008 18: 1602-1609; Published in Advance July 24, 2008, doi:10.1101/gr.080127.108
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  Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

  • Barbara Dunn and
  • Gavin Sherlock

  Genome Res. October 2008 18: 1610-1623; Published in Advance September 11, 2008, doi:10.1101/gr.076075.108
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  Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

  • Nicholas R. Thomson,
  • Debra J. Clayton,
  • Daniel Windhorst,
  • Georgios Vernikos,
  • Susanne Davidson,
  • Carol Churcher,
  • Michael A. Quail,
  • Mark Stevens,
  • Michael A. Jones,
  • Michael Watson,
  • Andy Barron,
  • Abigail Layton,
  • Derek Pickard,
  • Robert A. Kingsley,
  • Alex Bignell,
  • Louise Clark,
  • Barbara Harris,
  • Doug Ormond,
  • Zahra Abdellah,
  • Karen Brooks,
  • Inna Cherevach,
  • Tracey Chillingworth,
  • John Woodward,
  • Halina Norberczak,
  • Angela Lord,
  • Claire Arrowsmith,
  • Kay Jagels,
  • Sharon Moule,
  • Karen Mungall,
  • Mandy Sanders,
  • Sally Whitehead,
  • Jose A. Chabalgoity,
  • Duncan Maskell,
  • Tom Humphrey,
  • Mark Roberts,
  • Paul A. Barrow,
  • Gordon Dougan,
  • and Julian Parkhill

  Genome Res. October 2008 18: 1624-1637; Published in Advance June 26, 2008, doi:10.1101/gr.077404.108
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