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Table of Contents
February 2008; 18 (2)
COMMENTARY
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Confidence in comparative genomics
Elliott H. Margulies
Genome Res.
February 2008
18
:
199
-
200
;
doi:
10.1101/gr.7228008
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PERSPECTIVE
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Qualifying the relationship between sequence conservation and molecular function
Gregory M. Cooper
and
Christopher D. Brown
Genome Res.
February 2008
18
:
201
-
205
;
doi:
10.1101/gr.7205808
Abstract
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LETTERS
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Quantitative systems-level determinants of human genes targeted by successful drugs
Lixia Yao
and
Andrey Rzhetsky
Genome Res.
February 2008
18
:
206
-
213
;
Published in Advance
December 14, 2007
,
doi:
10.1101/gr.6888208
Abstract
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Supplemental Research Data
Podcast
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Alternative approach to a heavy weight problem
Amir Goren
,
Eddo Kim
,
Maayan Amit
,
Ron Bochner
,
Galit Lev-Maor
,
Nadav Ahituv
,
and
Gil Ast
Genome Res.
February 2008
18
:
214
-
220
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6661308
Abstract
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Supplemental Research Data
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Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes
Anuphap Prachumwat
and
Wen-Hsiung Li
Genome Res.
February 2008
18
:
221
-
232
;
Published in Advance
December 14, 2007
,
doi:
10.1101/gr.7046608
Abstract
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Supplemental Research Data
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Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
Zhuo Du
,
Yiqiang Zhao
,
and
Ning Li
Genome Res.
February 2008
18
:
233
-
241
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6905408
Abstract
Full Text
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Supplemental Research Data
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Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
Elfar Torarinsson
,
Zizhen Yao
,
Eric D. Wiklund
,
Jesper B. Bramsen
,
Claus Hansen
,
Jørgen Kjems
,
Niels Tommerup
,
Walter L. Ruzzo
,
and
Jan Gorodkin
Genome Res.
February 2008
18
:
242
-
251
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6887408
Abstract
Full Text
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Supplemental Research Data
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Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at
phox2b
David M. McGaughey
,
Ryan M. Vinton
,
Jimmy Huynh
,
Amr Al-Saif
,
Michael A. Beer
,
and
Andrew S. McCallion
Genome Res.
February 2008
18
:
252
-
260
;
Published in Advance
December 10, 2007
,
doi:
10.1101/gr.6929408
Abstract
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Supplemental Research Data
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Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast
Heiko Schober
,
Véronique Kalck
,
Miguel A. Vega-Palas
,
Griet Van Houwe
,
Daniel Sage
,
Michael Unser
,
Marc R. Gartenberg
,
and
Susan M. Gasser
Genome Res.
February 2008
18
:
261
-
271
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6687808
Abstract
Full Text
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Supplemental Research Data
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Wolbachia
genome integrated in an insect chromosome: Evolution and fate of laterally transferred endosymbiont genes
Naruo Nikoh
,
Kohjiro Tanaka
,
Fukashi Shibata
,
Natsuko Kondo
,
Masahiro Hizume
,
Masakazu Shimada
,
and
Takema Fukatsu
Genome Res.
February 2008
18
:
272
-
280
;
Published in Advance
December 11, 2007
,
doi:
10.1101/gr.7144908
Abstract
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Supplemental Research Data
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Genome-wide discovery and verification of novel structured RNAs in
Plasmodium falciparum
Tobias Mourier
,
Celine Carret
,
Sue Kyes
,
Zoe Christodoulou
,
Paul P. Gardner
,
Daniel C. Jeffares
,
Robert Pinches
,
Bart Barrell
,
Matt Berriman
,
Sam Griffiths-Jones
,
Alasdair Ivens
,
Chris Newbold
,
and
Arnab Pain
Genome Res.
February 2008
18
:
281
-
292
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6836108
Abstract
Full Text
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Supplemental Research Data
OPEN ACCESS ARTICLE
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A bacterial metapopulation adapts locally to phage predation despite global dispersal
Victor Kunin
,
Shaomei He
,
Falk Warnecke
,
S. Brook Peterson
,
Hector Garcia Martin
,
Matthew Haynes
,
Natalia Ivanova
,
Linda L. Blackall
,
Mya Breitbart
,
Forest Rohwer
,
Katherine D. McMahon
,
and
Philip Hugenholtz
Genome Res.
February 2008
18
:
293
-
297
;
Published in Advance
December 12, 2007
,
doi:
10.1101/gr.6835308
Abstract
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OPEN ACCESS ARTICLE
Methods
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Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
Gerton Lunter
,
Andrea Rocco
,
Naila Mimouni
,
Andreas Heger
,
Alexandre Caldeira
,
and
Jotun Hein
Genome Res.
February 2008
18
:
298
-
309
;
Published in Advance
December 11, 2007
,
doi:
10.1101/gr.6725608
Abstract
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Supplemental Research Data
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Generic eukaryotic core promoter prediction using structural features of DNA
Thomas Abeel
,
Yvan Saeys
,
Eric Bonnet
,
Pierre Rouzé
,
and
Yves Van de Peer
Genome Res.
February 2008
18
:
310
-
323
;
Published in Advance
December 20, 2007
,
doi:
10.1101/gr.6991408
Abstract
Full Text
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Supplemental Research Data
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Short read fragment assembly of bacterial genomes
Mark J. Chaisson
and
Pavel A. Pevzner
Genome Res.
February 2008
18
:
324
-
330
;
Published in Advance
December 14, 2007
,
doi:
10.1101/gr.7088808
Abstract
Full Text
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Resolving the structural features of genomic islands: A machine learning approach
Georgios S. Vernikos
and
Julian Parkhill
Genome Res.
February 2008
18
:
331
-
342
;
Published in Advance
December 10, 2007
,
doi:
10.1101/gr.7004508
Abstract
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Supplemental Research Data
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This Issue
February 2008;
18
(2)
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