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  Genomic architecture and inheritance of human ribosomal RNA gene clusters

  • Dawn M. Stults,
  • Michael W. Killen,
  • Heather H. Pierce,
  • and Andrew J. Pierce

  Genome Res. January 2008 18: 13-18; Published in Advance November 19, 2007, doi:10.1101/gr.6858507
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  Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA

  • Yulia Korshunova,
  • Rebecca K. Maloney,
  • Nathan Lakey,
  • Robert W. Citek,
  • Blaire Bacher,
  • Arief Budiman,
  • Jared M. Ordway,
  • W. Richard McCombie,
  • Jorge Leon,
  • Jeffrey A. Jeddeloh,
  • and John D. McPherson

  Genome Res. January 2008 18: 19-29; Published in Advance November 21, 2007, doi:10.1101/gr.6883307
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  The genome-wide determinants of human and chimpanzee microsatellite evolution

  • Yogeshwar D. Kelkar,
  • Svitlana Tyekucheva,
  • Francesca Chiaromonte,
  • and Kateryna D. Makova

  Genome Res. January 2008 18: 30-38; Published in Advance November 21, 2007, doi:10.1101/gr.7113408
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  A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: Implications for the facio-scapulo-humeral dystrophy

  • Andrei Petrov,
  • Jeanne Allinne,
  • Iryna Pirozhkova,
  • Dalila Laoudj,
  • Marc Lipinski,
  • and Yegor S. Vassetzky

  Genome Res. January 2008 18: 39-45; Published in Advance November 21, 2007, doi:10.1101/gr.6620908
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  Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

  • Leah O. Barrera,
  • Zirong Li,
  • Andrew D. Smith,
  • Karen C. Arden,
  • Webster K. Cavenee,
  • Michael Q. Zhang,
  • Roland D. Green,
  • and Bing Ren

  Genome Res. January 2008 18: 46-59; Published in Advance November 27, 2007, doi:10.1101/gr.6654808
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  Genomic copy number and expression variation within the C57BL/6J inbred mouse strain

  • Dawn E. Watkins-Chow and
  • William J. Pavan

  Genome Res. January 2008 18: 60-66; Published in Advance November 21, 2007, doi:10.1101/gr.6927808
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  Genome-wide patterns of gene flow across a house mouse hybrid zone

  • Katherine C. Teeter,
  • Bret A. Payseur,
  • Leslie W. Harris,
  • Margaret A. Bakewell,
  • Lisa M. Thibodeau,
  • Janelle E. O’Brien,
  • James G. Krenz,
  • Maria A. Sans-Fuentes,
  • Michael W. Nachman,
  • and Priscilla K. Tucker

  Genome Res. January 2008 18: 67-76; Published in Advance November 19, 2007, doi:10.1101/gr.6757907
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  Features of 5′-splice-site efficiency derived from disease-causing mutations and comparative genomics

  • Xavier Roca,
  • Andrew J. Olson,
  • Atmakuri R. Rao,
  • Espen Enerly,
  • Vessela N. Kristensen,
  • Anne-Lise Børresen-Dale,
  • Brage S. Andresen,
  • Adrian R. Krainer,
  • and Ravi Sachidanandam

  Genome Res. January 2008 18: 77-87; Published in Advance November 21, 2007, doi:10.1101/gr.6859308
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  Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

  • Schraga Schwartz,
  • João Silva,
  • David Burstein,
  • Tal Pupko,
  • Eduardo Eyras,
  • and Gil Ast

  Genome Res. January 2008 18: 88-103; Published in Advance November 21, 2007, doi:10.1101/gr.6818908
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  Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation

  • Guo-Qing Tang and
  • E. Stuart Maxwell

  Genome Res. January 2008 18: 104-112; Published in Advance November 21, 2007, doi:10.1101/gr.6539108
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  Genomics, transcriptomics, and peptidomics of neuropeptides and protein hormones in the red flour beetle Tribolium castaneum

  • Bin Li,
  • Reinhard Predel,
  • Susanne Neupert,
  • Frank Hauser,
  • Yoshiaki Tanaka,
  • Giuseppe Cazzamali,
  • Michael Williamson,
  • Yasuyuki Arakane,
  • Peter Verleyen,
  • Liliane Schoofs,
  • Joachim Schachtner,
  • Cornelis J.P. Grimmelikhuijzen,
  • and Yoonseong Park

  Genome Res. January 2008 18: 113-122; Published in Advance November 19, 2007, doi:10.1101/gr.6714008
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  Identification of novel modulators of mitochondrial function by a genome-wide RNAi screen in Drosophila melanogaster

  • Jian Chen,
  • Xiaoying Shi,
  • Ranjani Padmanabhan,
  • Qiong Wang,
  • Zhidan Wu,
  • Susan C. Stevenson,
  • Marc Hild,
  • Dan Garza,
  • and Hao Li

  Genome Res. January 2008 18: 123-136; Published in Advance November 27, 2007, doi:10.1101/gr.6940108
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  A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

  • Devin R. Scannell and
  • Kenneth H. Wolfe

  Genome Res. January 2008 18: 137-147; Published in Advance November 19, 2007, doi:10.1101/gr.6341207
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  Universal patterns of purifying selection at noncoding positions in bacteria

  • Nacho Molina and
  • Erik van Nimwegen

  Genome Res. January 2008 18: 148-160; Published in Advance November 21, 2007, doi:10.1101/gr.6759507
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  Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates

  • Nicholas R. Thomson,
  • Matthew T.G. Holden,
  • Caroline Carder,
  • Nicola Lennard,
  • Sarah J. Lockey,
  • Pete Marsh,
  • Paul Skipp,
  • C. David O’Connor,
  • Ian Goodhead,
  • Halina Norbertzcak,
  • Barbara Harris,
  • Doug Ormond,
  • Richard Rance,
  • Michael A. Quail,
  • Julian Parkhill,
  • Richard S. Stephens,
  • and Ian N. Clarke

  Genome Res. January 2008 18: 161-171; Published in Advance November 21, 2007, doi:10.1101/gr.7020108
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