Table of Contents

December 2007; 17 (12)

REVIEW

  • The influence of genetic variation on gene expression

    • Rohan B.H. Williams,
    • Eva K.F. Chan,
    • Mark J. Cowley,
    • and Peter F.R. Little
    Genome Res. December 2007 17: 1707-1716; doi:10.1101/gr.6981507

LETTERS

  • Confirmation study of prostate cancer risk variants at 8q24 in African Americans identifies a novel risk locus

    • Christiane Robbins,
    • Jada Benn Torres,
    • Stanley Hooker,
    • Carolina Bonilla,
    • Wenndy Hernandez,
    • Angela Candreva,
    • Chiledum Ahaghotu,
    • Rick Kittles,
    • and John Carpten
    Genome Res. December 2007 17: 1717-1722; Published in Advance October 31, 2007, doi:10.1101/gr.6782707

  • Computational and experimental identification of novel human imprinted genes

    • Philippe P. Luedi,
    • Fred S. Dietrich,
    • Jennifer R. Weidman,
    • Jason M. Bosko,
    • Randy L. Jirtle,
    • and Alexander J. Hartemink
    Genome Res. December 2007 17: 1723-1730; Published in Advance November 30, 2007, doi:10.1101/gr.6584707

  • Gene-specific vulnerability to imprinting variability in human embryonic stem cell lines

    • Kee-Pyo Kim,
    • Alexandra Thurston,
    • Christine Mummery,
    • Dorien Ward-van Oostwaard,
    • Helen Priddle,
    • Cinzia Allegrucci,
    • Chris Denning,
    • and Lorraine Young
    Genome Res. December 2007 17: 1731-1742; Published in Advance November 7, 2007, doi:10.1101/gr.6609207

  • Significant gene content variation characterizes the genomes of inbred mouse strains

    • Gene Cutler,
    • Lisa A. Marshall,
    • Ni Chin,
    • Helene Baribault,
    • and Paul D. Kassner
    Genome Res. December 2007 17: 1743-1754; Published in Advance November 7, 2007, doi:10.1101/gr.6754607

  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome

    • Peter Andolfatto
    Genome Res. December 2007 17: 1755-1762; Published in Advance November 7, 2007, doi:10.1101/gr.6691007

Methods

  • Targeted discovery of novel human exons by comparative genomics

    • Adam Siepel,
    • Mark Diekhans,
    • Broňa Brejová,
    • Laura Langton,
    • Michael Stevens,
    • Charles L.G. Comstock,
    • Colleen Davis,
    • Brent Ewing,
    • Shelly Oommen,
    • Christopher Lau,
    • Hung-Chun Yu,
    • Jianfeng Li,
    • Bruce A. Roe,
    • Phil Green,
    • Daniela S. Gerhard,
    • Gary Temple,
    • David Haussler,
    • and Michael R. Brent
    Genome Res. December 2007 17: 1763-1773; Published in Advance November 7, 2007, doi:10.1101/gr.7128207

  • Examining protein–protein interactions using endogenously tagged yeast arrays: The Cross-and-Capture system

    • Bernhard Suter,
    • Michael J. Fetchko,
    • Ralph Imhof,
    • Christopher I. Graham,
    • Ingrid Stoffel-Studer,
    • Caroline Zbinden,
    • Maanasa Raghavan,
    • Lianet Lopez,
    • Lucija Beneti,
    • Jacqueline Hort,
    • Jeffrey Fillingham,
    • Jack F. Greenblatt,
    • Guri Giaever,
    • Corey Nislow,
    • and Igor Stagljar
    Genome Res. December 2007 17: 1774-1782; Published in Advance November 7, 2007, doi:10.1101/gr.6667007

RESOURCES

  • A second-generation combined linkage–physical map of the human genome

    • Tara C. Matise,
    • Fang Chen,
    • Wenwei Chen,
    • Francisco M. De La Vega,
    • Mark Hansen,
    • Chunsheng He,
    • Fiona C.L. Hyland,
    • Giulia C. Kennedy,
    • Xiangyang Kong,
    • Sarah S. Murray,
    • Janet S. Ziegle,
    • William C.L. Stewart,
    • and Steven Buyske
    Genome Res. December 2007 17: 1783-1786; Published in Advance November 7, 2007, doi:10.1101/gr.7156307

  • Sequence-based estimation of minisatellite and microsatellite repeat variability

    • Matthieu Legendre,
    • Nathalie Pochet,
    • Theodore Pak,
    • and Kevin J. Verstrepen
    Genome Res. December 2007 17: 1787-1796; Published in Advance October 31, 2007, doi:10.1101/gr.6554007
    OPEN ACCESS ARTICLE

  • 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107

  • Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi

    • Michael J. Cornell,
    • Intikhab Alam,
    • Darren M. Soanes,
    • Han Min Wong,
    • Cornelia Hedeler,
    • Norman W. Paton,
    • Magnus Rattray,
    • Simon J. Hubbard,
    • Nicholas J. Talbot,
    • and Stephen G. Oliver
    Genome Res. December 2007 17: 1809-1822; Published in Advance November 5, 2007, doi:10.1101/gr.6531807
    OPEN ACCESS ARTICLE

12 Drosophila Genomes/Letter

  • Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

    • Michael F. Lin,
    • Joseph W. Carlson,
    • Madeline A. Crosby,
    • Beverley B. Matthews,
    • Charles Yu,
    • Soo Park,
    • Kenneth H. Wan,
    • Andrew J. Schroeder,
    • L. Sian Gramates,
    • Susan E. St. Pierre,
    • Margaret Roark,
    • Kenneth L. Wiley, Jr.,
    • Rob J. Kulathinal,
    • Peili Zhang,
    • Kyl V. Myrick,
    • Jerry V. Antone,
    • Susan E. Celniker,
    • William M. Gelbart,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1823-1836; Published in Advance November 7, 2007, doi:10.1101/gr.6679507
    OPEN ACCESS ARTICLE

  • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes

    • Andreas Heger and
    • Chris P. Ponting
    Genome Res. December 2007 17: 1837-1849; Published in Advance November 7, 2007, doi:10.1101/gr.6249707
    OPEN ACCESS ARTICLE

  • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

    • J. Graham Ruby,
    • Alexander Stark,
    • Wendy K. Johnston,
    • Manolis Kellis,
    • David P. Bartel,
    • and Eric C. Lai
    Genome Res. December 2007 17: 1850-1864; Published in Advance November 7, 2007, doi:10.1101/gr.6597907
    OPEN ACCESS ARTICLE

  • Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

    • Alexander Stark,
    • Pouya Kheradpour,
    • Leopold Parts,
    • Julius Brennecke,
    • Emily Hodges,
    • Gregory J. Hannon,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1865-1879; Published in Advance November 7, 2007, doi:10.1101/gr.6593807
    OPEN ACCESS ARTICLE

  • Genome-scale analysis of positionally relocated genes

    • Arjun Bhutkar,
    • Susan M. Russo,
    • Temple F. Smith,
    • and William M. Gelbart
    Genome Res. December 2007 17: 1880-1887; Published in Advance November 7, 2007, doi:10.1101/gr.7062307
    OPEN ACCESS ARTICLE

  • Sequence variation within the rRNA gene loci of 12 Drosophila species

    • Deborah E. Stage and
    • Thomas H. Eickbush
    Genome Res. December 2007 17: 1888-1897; Published in Advance November 7, 2007, doi:10.1101/gr.6376807
    OPEN ACCESS ARTICLE

  • Genomic regulatory blocks underlie extensive microsynteny conservation in insects

    • Pär G. Engström,
    • Shannan J. Ho Sui,
    • Øyvind Drivenes,
    • Thomas S. Becker,
    • and Boris Lenhard
    Genome Res. December 2007 17: 1898-1908; Published in Advance November 7, 2007, doi:10.1101/gr.6669607
    OPEN ACCESS ARTICLE

  • Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase

    • Alfredo Villasante,
    • José P. Abad,
    • Rosario Planelló,
    • María Méndez-Lago,
    • Susan E. Celniker,
    • and Beatriz de Pablos
    Genome Res. December 2007 17: 1909-1918; Published in Advance November 7, 2007, doi:10.1101/gr.6365107
    OPEN ACCESS ARTICLE

12 Drosophila Genomes/Methods

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This Issue

December 2007; 17 (12)
Cover
  1. REVIEW
  2. LETTERS
  3. Methods
  4. RESOURCES
  5. 12 Drosophila Genomes/Letter
  6. 12 Drosophila Genomes/Methods

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