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  An analysis of the gene complement of a marsupial, Monodelphis domestica: Evolution of lineage-specific genes and giant chromosomes

  • Leo Goodstadt,
  • Andreas Heger,
  • Caleb Webber,
  • and Chris P. Ponting

  Genome Res. July 2007 17: 969-981; Published in Advance May 10, 2007, doi:10.1101/gr.6093907
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  • <i>Monodelphis domestica</i> Genome
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  Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system

  • Katherine Belov,
  • Claire E. Sanderson,
  • Janine E. Deakin,
  • Emily S.W. Wong,
  • Daniel Assange,
  • Kaighin A. McColl,
  • Alex Gout,
  • Bernard de Bono,
  • Alexander D. Barrow,
  • Terence P. Speed,
  • John Trowsdale,
  • and Anthony T. Papenfuss

  Genome Res. July 2007 17: 982-991; Published in Advance May 10, 2007, doi:10.1101/gr.6121807
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  • Monodelphis domestica Genome
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  Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • Andrew J. Gentles,
  • Matthew J. Wakefield,
  • Oleksiy Kohany,
  • Wanjun Gu,
  • Mark A. Batzer,
  • David D. Pollock,
  • and Jerzy Jurka

  Genome Res. July 2007 17: 992-1004; Published in Advance May 10, 2007, doi:10.1101/gr.6070707
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  Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes

  • Katsuki Tsuritani,
  • Takuma Irie,
  • Riu Yamashita,
  • Yuta Sakakibara,
  • Hiroyuki Wakaguri,
  • Akinori Kanai,
  • Junko Mizushima-Sugano,
  • Sumio Sugano,
  • Kenta Nakai,
  • and Yutaka Suzuki

  Genome Res. July 2007 17: 1005-1014; Published in Advance June 13, 2007, doi:10.1101/gr.6030107
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  Differing patterns of selection in alternative and constitutive splice sites

  • Kavita Garg and
  • Phil Green

  Genome Res. July 2007 17: 1015-1022; Published in Advance June 7, 2007, doi:10.1101/gr.6347907
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  A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing

  • Rodger B. Voelker and
  • J. Andrew Berglund

  Genome Res. July 2007 17: 1023-1033; Published in Advance May 24, 2007, doi:10.1101/gr.6017807
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  Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel,
  • Yuri I. Wolf,
  • Igor B. Rogozin,
  • and Eugene V. Koonin

  Genome Res. July 2007 17: 1034-1044; Published in Advance May 10, 2007, doi:10.1101/gr.6438607
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  Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel,
  • Igor B. Rogozin,
  • Yuri I. Wolf,
  • and Eugene V. Koonin

  Genome Res. July 2007 17: 1045-1050; Published in Advance May 10, 2007, doi:10.1101/gr.5978207
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  A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells

  • Guglielmo Roma,
  • Gilda Cobellis,
  • Pamela Claudiani,
  • Francesco Maione,
  • Pedro Cruz,
  • Gaetano Tripoli,
  • Marco Sardiello,
  • Ivana Peluso,
  • and Elia Stupka

  Genome Res. July 2007 17: 1051-1060; Published in Advance May 31, 2007, doi:10.1101/gr.5720807
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  Transcription factor modularity in a gene-centered C. elegans core neuronal protein–DNA interaction network

  • Vanessa Vermeirssen,
  • M. Inmaculada Barrasa,
  • César A. Hidalgo,
  • Jenny Aurielle B. Babon,
  • Reynaldo Sequerra,
  • Lynn Doucette-Stamm,
  • Albert-László Barabási,
  • and Albertha J.M. Walhout

  Genome Res. July 2007 17: 1061-1071; Published in Advance May 18, 2007, doi:10.1101/gr.6148107
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  Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

  • Thomas Wicker and
  • Beat Keller

  Genome Res. July 2007 17: 1072-1081; Published in Advance June 7, 2007, doi:10.1101/gr.6214107
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  Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes

  • Mohammed Sebaihia,
  • Michael W. Peck,
  • Nigel P. Minton,
  • Nicholas R. Thomson,
  • Matthew T.G. Holden,
  • Wilfrid J. Mitchell,
  • Andrew T. Carter,
  • Stephen D. Bentley,
  • David R. Mason,
  • Lisa Crossman,
  • Catherine J. Paul,
  • Alasdair Ivens,
  • Marjon H.J. Wells-Bennik,
  • Ian J. Davis,
  • Ana M. Cerdeño-Tárraga,
  • Carol Churcher,
  • Michael A. Quail,
  • Tracey Chillingworth,
  • Theresa Feltwell,
  • Audrey Fraser,
  • Ian Goodhead,
  • Zahra Hance,
  • Kay Jagels,
  • Natasha Larke,
  • Mark Maddison,
  • Sharon Moule,
  • Karen Mungall,
  • Halina Norbertczak,
  • Ester Rabbinowitsch,
  • Mandy Sanders,
  • Mark Simmonds,
  • Brian White,
  • Sally Whithead,
  • and Julian Parkhill

  Genome Res. July 2007 17: 1082-1092; Published in Advance May 22, 2007, doi:10.1101/gr.6282807
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