Volume 16, Issue 10 | October 2006

Forum
- - Mouse SNPs for evolutionary biology: Beware of ascertainment biases
    Pierre Boursot
    Khalid Belkhir
    First Published October 2, 2006
  - Regions of high differentiation—Worth a check
    Bettina Harr
    First Published October 2, 2006
PERSPECTIVE
- - Ultrasensitive RNA profiling: Counting single molecules on microarrays
    Kalim U. Mir
    First Published September 8, 2006
LETTERS
- - Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21
    Christoph Grunau
    Jérome Buard
    Marie-Elisabeth Brun
    Albertina De Sario
    First Published September 8, 2006
  - Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
    Ali Mortazavi
    Evonne Chen Leeper Thompson
    Sarah T. Garcia
    Richard M. Myers
    Barbara Wold
    First Published September 8, 2006
  - Common fragile sites are conserved features of human and mouse chromosomes and relate to large active genes
    Anne Helmrich
    Karen Stout-Weider
    Klaus Hermann
    Evelin Schrock
    Thomas Heiden
    First Published September 5, 2006
  - Genomic organization of the Drosophila telomere retrotransposable elements
    Janet A. George
    P. Gregory DeBaryshe
    Karen L. Traverse
    Susan E. Celniker
    Mary-Lou Pardue
    First Published September 8, 2006
  - Uneven chromosome contraction and expansion in the maize genome
    Rémy Bruggmann
    Arvind K. Bharti
    Heidrun Gundlach
    Jinsheng Lai
    Sarah Young
    Ana C. Pontaroli Fusheng Wei Georg Haberer Galina Fuks Chunguang Du Christina Raymond Matt C. Estep Renyi Liu Jeffrey L. Bennetzen Agnes P. Chan Pablo D. Rabinowicz John Quackenbush W. Brad Barbazuk Rod A. Wing Bruce Birren
    ...[+15 authors]...,
    Chad Nusbaum
    Steve Rounsley
    Klaus F.X. Mayer
    Joachim Messing
    First Published August 10, 2006
  - Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
    Jennifer S. Hawkins
    HyeRan Kim
    John D. Nason
    Rod A. Wing
    Jonathan F. Wendel
    First Published September 5, 2006
  - Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
    Benoit Piegu
    Romain Guyot
    Nathalie Picault
    Anne Roulin
    Abhijit Saniyal
    Hyeran Kim Kristi Collura
    ...[+2 authors]...,
    Darshan S. Brar
    Scott Jackson
    Rod A. Wing
    Olivier Panaud
    First Published September 8, 2006
  - Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution
    Scott William Roy
    David Penny
    First Published September 8, 2006
  - MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    Cheng Lu
    Karthik Kulkarni
    Frédéric F. Souret
    Ramesh MuthuValliappan
    Shivakundan Singh Tej
    R. Scott Poethig Ian R. Henderson
    ...[+2 authors]...,
    Steven E. Jacobsen
    Wenzhong Wang
    Pamela J. Green
    Blake C. Meyers
    First Published September 5, 2006
Methods
- - Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    Eugene Berezikov
    Geert van Tetering
    Mark Verheul
    Jose van de Belt
    Linda van Laake
    Joost Vos Robert Verloop Marc van de Wetering Victor Guryev Shuji Takada
    ...[+5 authors]...,
    Anton Jan van Zonneveld
    Hiroyuki Mano
    Ronald Plasterk
    Edwin Cuppen
    First Published September 5, 2006
  - Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
    Josée Dostie
    Todd A. Richmond
    Ramy A. Arnaout
    Rebecca R. Selzer
    William L. Lee
    Tracey A. Honan Eric D. Rubio Anton Krumm
    ...[+3 authors]...,
    Justin Lamb
    Chad Nusbaum
    Roland D. Green
    Job Dekker
    First Published September 5, 2006
  - Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
    George A. Follows
    Pawan Dhami
    Berthold Göttgens
    Alexander W. Bruce
    Peter J. Campbell
    Shane C. Dillon Aileen M. Smith Christoph Koch Ian J. Donaldson Mike A. Scott
    ...[+5 authors]...,
    Ian Dunham
    Mary E. Janes
    David Vetrie
    Anthony R. Green
    First Published September 8, 2006
  - Inference of population genetic parameters in metagenomics: A clean look at messy data
    Philip L.F. Johnson
    Montgomery Slatkin
    First Published September 5, 2006

Table of Contents

Volume 16, Issue 10 | October 2006

Forum

Mouse SNPs for evolutionary biology: Beware of ascertainment biases

Regions of high differentiation—Worth a check

PERSPECTIVE

Ultrasensitive RNA profiling: Counting single molecules on microarrays

LETTERS

Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21

Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire

Common fragile sites are conserved features of human and mouse chromosomes and relate to large active genes

Genomic organization of the Drosophila telomere retrotransposable elements

Uneven chromosome contraction and expansion in the maize genome

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution

MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

Methods

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis

Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements

Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites

Inference of population genetic parameters in metagenomics: A clean look at messy data

Table of Contents

Volume 16, Issue 10 | October 2006

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