Volume 15, Issue 10 | October 2005

ARTICLES
- - De novo discovery of a tissue-specific gene regulatory module in a chordate
    David S. Johnson
    Qing Zhou
    Kasumi Yagi
    Nori Satoh
    Wing Wong
    First Published September 16, 2005
  - Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
    Claudine Médigue
    Evelyne Krin
    Géraldine Pascal
    Valérie Barbe
    Andreas Bernsel
    Philippe N. Bertin Frankie Cheung Stéphane Cruveiller Salvino D'Amico Angela Duilio Gang Fang Georges Feller Christine Ho Sophie Mangenot Gennaro Marino Johan Nilsson Ermenegilda Parrilli Eduardo P.C. Rocha Zoé Rouy Agnieszka Sekowska
    ...[+15 authors]...,
    Maria Luisa Tutino
    David Vallenet
    Gunnar von Heijne
    Antoine Danchin
    First Published September 16, 2005
  - Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis
    Michaela Falb
    Friedhelm Pfeiffer
    Peter Palm
    Karin Rodewald
    Volker Hickmann
    First Published September 16, 2005
LETTERS
- - A genome-wide survey of structural variation between human and chimpanzee
    Tera L. Newman
    Eray Tuzun
    V. Anne Morrison
    Karen E. Hayden
    Mario Ventura
    First Published September 16, 2005
  - Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: Clues from human phylogeography
    Igor Mokrousov
    Ho Minh Ly
    Tatiana Otten
    Nguyen Ngoc Lan
    Boris Vyshnevskyi
    First Published September 16, 2005
  - Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    Stephen S. Fong
    Andrew R. Joyce
    Bernhard Ø. Palsson
    First Published October 3, 2005
  - Evolutionary constraints in conserved nongenic sequences of mammals
    Peter D. Keightley
    Gregory V. Kryukov
    Shamil Sunyaev
    Daniel L. Halligan
    Daniel J. Gaffney
    First Published October 3, 2005
  - Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements
    Florian M. Pauler
    Stefan H. Stricker
    Katarzyna E. Warczok
    Denise P. Barlow
    First Published October 3, 2005
  - Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels
    Martin Bengtsson
    Anders Ståhlberg
    Patrik Rorsman
    Mikael Kubista
    First Published October 3, 2005
  - Sex chromosome evolution: Molecular aspects of Y-chromosome degeneration in Drosophila
    Doris Bachtrog
    First Published September 16, 2005
  - The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans
    Olivier Zugasti
    Jeena Rajan
    Patricia E. Kuwabara
    First Published October 3, 2005
  - Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae
    Michaël Bekaert
    Hugues Richard
    Bernard Prum
    Jean-Pierre Rousset
    First Published October 3, 2005
  - Metabolic functions of duplicate genes in Saccharomyces cerevisiae
    Lars Kuepfer
    Uwe Sauer
    Lars M. Blank
    First Published October 3, 2005
  - Differential methylation of genes and repeats in land plants
    Pablo D. Rabinowicz
    Robert Citek
    Muhammad A. Budiman
    Andrew Nunberg
    Joseph A. Bedell
    Nathan Lakey
    ...[+1 authors]...,
    Andrew L. O'Shaughnessy
    Lidia U. Nascimento
    W. Richard McCombie
    Robert A. Martienssen
    First Published October 3, 2005
Methods
- - Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries
    John Emberton
    Jianxin Ma
    Yinan Yuan
    Phillip SanMiguel
    Jeffrey L. Bennetzen
    First Published October 3, 2005
  - Simple, robust methods for high-throughput nanoliter-scale DNA sequencing
    Duane E. Smailus
    Andre Marziali
    Philip Dextras
    Marco A. Marra
    Robert A. Holt
    First Published September 16, 2005
RESOURCES
- - Galaxy: A platform for interactive large-scale genome analysis
    Belinda Giardine
    Cathy Riemer
    Ross C. Hardison
    Richard Burhans
    Laura Elnitski
    Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
    ...[+4 authors]...,
    James Taylor
    Webb Miller
    W. James Kent
    Anton Nekrutenko
    First Published September 16, 2005
  - The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
    Kevin P. Byrne
    Kenneth H. Wolfe
    First Published September 16, 2005

Table of Contents

Volume 15, Issue 10 | October 2005

ARTICLES

De novo discovery of a tissue-specific gene regulatory module in a chordate

Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis

LETTERS

A genome-wide survey of structural variation between human and chimpanzee

Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: Clues from human phylogeography

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

Evolutionary constraints in conserved nongenic sequences of mammals

Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements

Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels

Sex chromosome evolution: Molecular aspects of Y-chromosome degeneration in Drosophila

The function and expansion of the Patched- and Hedgehog-related homologs in C. elegans

Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

Differential methylation of genes and repeats in land plants

Methods

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries

Simple, robust methods for high-throughput nanoliter-scale DNA sequencing

RESOURCES

Galaxy: A platform for interactive large-scale genome analysis

The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species

Table of Contents

Volume 15, Issue 10 | October 2005

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ARTICLES

LETTERS

Methods

RESOURCES