Volume 14, Issue 7 | July 2004

ARTICLES
- - A Phylogeny of Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution
    Soochin Cho
    Suk-Won Jin
    Adam Cohen
    Ronald E. Ellis
    First Published July 1, 2004
  - The Insertional History of an Active Family of L1 Retrotransposons in Humans
    Stéphane Boissinot
    Ali Entezam
    Lynn Young
    Peter J. Munson
    Anthony V. Furano
    First Published June 14, 2004
LETTERS
- - Local Definition of Ty1 Target Preference by Long Terminal Repeats and Clustered tRNA Genes
    Nurjana Bachman
    Yolanda Eby
    Jef D. Boeke
    First Published June 14, 2004
  - Extensive Expansion of the Claudin Gene Family in the Teleost Fish, Fugu rubripes
    Yong Hwee Loh
    Alan Christoffels
    Sydney Brenner
    Walter Hunziker
    Byrappa Venkatesh
    First Published June 14, 2004
  - Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome
    Pascal Kahlem
    Marc Sultan
    Ralf Herwig
    Matthias Steinfath
    Daniela Balzereit
    Barbara Eppens Nidhi G. Saran Mathew T. Pletcher Sarah T. South
    ...[+4 authors]...,
    Gail Stetten
    Hans Lehrach
    Roger H. Reeves
    Marie-Laure Yaspo
    First Published July 1, 2004
  - Gene Expression From the Aneuploid Chromosome in a Trisomy Mouse Model of Down Syndrome
    Robert Lyle
    Corinne Gehrig
    Charlotte Neergaard-Henrichsen
    Samuel Deutsch
    Stylianos E. Antonarakis
    First Published July 1, 2004
  - Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse
    Karen D. Tsuchiya
    John M. Greally
    Yajun Yi
    Kevin P. Noel
    Jean-Pierre Truong
    First Published June 14, 2004
  - Genetic Variation in Coding Regions Between and Within Commonly Used Inbred Rat Strains
    Bart M.G. Smits
    Bert F.M. van Zutphen
    Ronald H.A. Plasterk
    Edwin Cuppen
    First Published July 1, 2004
  - Recovery of a Function Involving Gene Duplication by Retroposition in Saccharomyces cerevisiae
    Joseph Schacherer
    Yves Tourrette
    Jean-Luc Souciet
    Serge Potier
    Jacky de Montigny
    First Published July 1, 2004
  - Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
    Natalie C. Duarte
    Markus J. Herrgård
    Bernhard Ø. Palsson
    First Published June 14, 2004
  - Evolution and Topology in the Yeast Protein Interaction Network
    Stefan Wuchty
    First Published July 1, 2004
  - A Protein Interaction Framework for Human mRNA Degradation
    Ben Lehner
    Christopher M. Sanderson
    First Published July 1, 2004
  - Functional Proteomics Mapping of a Human Signaling Pathway
    Frédéric Colland
    Xavier Jacq
    Virginie Trouplin
    Christelle Mougin
    Caroline Groizeleau
    Alexandre Hamburger
    ...[+1 authors]...,
    Alain Meil
    Jérôme Wojcik
    Pierre Legrain
    Jean-Michel Gauthier
    First Published July 1, 2004
  - Identifying Candidate Causal Variants Responsible for Altered Activity of the ABCB1 Multidrug Resistance Gene
    Nicole Soranzo
    Gianpiero L. Cavalleri
    Michael E. Weale
    Nicholas W. Wood
    Chantal Depondt
    First Published June 14, 2004
  - Genetic Structure Adds Power to Detect Schizophrenia Susceptibility at SLIT3 in the Chinese Han Population
    YongYong Shi
    XinZhi Zhao
    Lan Yu
    Ran Tao
    JunXia Tang
    YuJuan La Yun Duan Bo Gao NiuFan Gu YiFeng Xu GuoYin Feng
    ...[+6 authors]...,
    ShaoMin Zhu
    HuiJun Liu
    Hugh Salter
    Lin He
    First Published July 1, 2004
  - Two Breakpoint Clusters at Fragile Site FRA3B Form Phased Nucleosomes
    David J. Mulvihill
    Yuh-Hwa Wang
    First Published July 1, 2004
  - Human Haplotype Block Sizes Are Negatively Correlated With Recombination Rates
    Tiffany A. Greenwood
    Brinda K. Rana
    Nicholas J. Schork
    First Published July 1, 2004
Methods
- - Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to Staphylococcus aureus
    Wynand B.L. Alkema
    Boris Lenhard
    Wyeth W. Wasserman
    First Published July 1, 2004
  - Global Survey of Chromatin Accessibility Using DNA Microarrays
    M. Ryan Weil
    Piotr Widlak
    John D. Minna
    Harold R. Garner
    First Published July 1, 2004
  - An Efficient Method to Generate Chromosomal Rearrangements by Targeted DNA Double-Strand Breaks in Drosophila melanogaster
    Dieter Egli
    Ernst Hafen
    Walter Schaffner
    First Published June 14, 2004
  - Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
    Aaron C.E. Darling
    Bob Mau
    Frederick R. Blattner
    Nicole T. Perna
    First Published July 1, 2004
  - SNP Discovery in Pooled Samples With Mismatch Repair Detection
    Hossein Fakhrai-Rad
    Jianbiao Zheng
    Thomas D. Willis
    Kee Wong
    Kent Suyenaga
    Martin Moorhead Jim Eberle Yvonne R. Thorstenson
    ...[+3 authors]...,
    Ted Jones
    Ronald W. Davis
    Eugeni Namsaraev
    Malek Faham
    First Published July 1, 2004
  - A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome
    Mari Cleide Sogayar
    Anamaria A. Camargo
    First Published June 14, 2004
RESOURCES
- - A 1463 Gene Cattle–Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates
    Annelie Everts-van der Wind
    Srinivas R. Kata
    Mark R. Band
    Mark Rebeiz
    Denis M. Larkin
    Robin E. Everts Cheryl A. Green Lei Liu Shreedhar Natarajan Tom Goldammer
    ...[+5 authors]...,
    Jun Heon Lee
    Stephanie McKay
    James E. Womack
    Harris A. Lewin
    First Published July 1, 2004
  - Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences
    Victor Guryev
    Eugene Berezikov
    Rainer Malik
    Ronald H.A. Plasterk
    Edwin Cuppen
    First Published July 1, 2004
ERRATA
- - Correction for Volume 14, p. 414
    First Published July 1, 2004
  - Correction for Volume 14, p. 742
    First Published July 1, 2004

Table of Contents

Volume 14, Issue 7 | July 2004

ARTICLES

A Phylogeny of Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution

The Insertional History of an Active Family of L1 Retrotransposons in Humans

LETTERS

Local Definition of Ty1 Target Preference by Long Terminal Repeats and Clustered tRNA Genes

Extensive Expansion of the Claudin Gene Family in the Teleost Fish, Fugu rubripes

Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome

Gene Expression From the Aneuploid Chromosome in a Trisomy Mouse Model of Down Syndrome

Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse

Genetic Variation in Coding Regions Between and Within Commonly Used Inbred Rat Strains

Recovery of a Function Involving Gene Duplication by Retroposition in Saccharomyces cerevisiae

Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

Evolution and Topology in the Yeast Protein Interaction Network

A Protein Interaction Framework for Human mRNA Degradation

Functional Proteomics Mapping of a Human Signaling Pathway

Identifying Candidate Causal Variants Responsible for Altered Activity of the ABCB1 Multidrug Resistance Gene

Genetic Structure Adds Power to Detect Schizophrenia Susceptibility at SLIT3 in the Chinese Han Population

Two Breakpoint Clusters at Fragile Site FRA3B Form Phased Nucleosomes

Human Haplotype Block Sizes Are Negatively Correlated With Recombination Rates

Methods

Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to Staphylococcus aureus

Global Survey of Chromatin Accessibility Using DNA Microarrays

An Efficient Method to Generate Chromosomal Rearrangements by Targeted DNA Double-Strand Breaks in Drosophila melanogaster

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

SNP Discovery in Pooled Samples With Mismatch Repair Detection

A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome

RESOURCES

A 1463 Gene Cattle–Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates

Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences

ERRATA

Correction for Volume 14, p. 414

Correction for Volume 14, p. 742

Table of Contents

Volume 14, Issue 7 | July 2004

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ARTICLES

LETTERS

Methods

RESOURCES

ERRATA