Volume 14, Issue 8 | August 2004

ARTICLES
- - The Complete Genome and Proteome of Mycoplasma mobile
    Jacob D. Jaffe
    Nicole Stange-Thomann
    Cherylyn Smith
    David DeCaprio
    Sheila Fisher
    Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
    ...[+10 authors]...,
    Chad Nusbaum
    Bruce Birren
    Howard C. Berg
    George M. Church
    First Published August 2, 2004
  - Regional Patterns of Gene Expression in Human and Chimpanzee Brains
    Philipp Khaitovich
    Bjoern Muetzel
    Xinwei She
    Michael Lachmann
    Ines Hellmann
    Janko Dietzsch Stephan Steigele Hong-Hai Do Gunter Weiss Wolfgang Enard Florian Heissig
    ...[+6 authors]...,
    Thomas Arendt
    Kay Nieselt-Struwe
    Evan E. Eichler
    Svante Pääbo
    First Published August 2, 2004
LETTERS
- - Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
    Corrinne E. Grover
    HyeRan Kim
    Rod A. Wing
    Andrew H. Paterson
    Jonathan F. Wendel
    First Published July 15, 2004
  - Segmental Duplications Flank the Multiple Sclerosis Locus on Chromosome 17q
    Daniel C. Chen
    Janna Saarela
    Royden A. Clark
    Timo Miettinen
    Anthony Chi
    First Published July 15, 2004
  - Segmental Phylogenetic Relationships of Inbred Mouse Strains Revealed by Fine-Scale Analysis of Sequence Variation Across 4.6 Mb of Mouse Genome
    Kelly A. Frazer
    Claire M. Wade
    David A. Hinds
    Nila Patil
    David R. Cox
    First Published August 2, 2004
  - Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex
    Riza Daza-Vamenta
    Gustavo Glusman
    Lee Rowen
    Brandon Guthrie
    Daniel E. Geraghty
    First Published August 2, 2004
  - Comparative Evolutionary Genomics of Androgen-Binding Protein Genes
    Richard D. Emes
    Matthew C. Riley
    Christina M. Laukaitis
    Leo Goodstadt
    Robert C. Karn
    First Published July 15, 2004
  - cis-Regulatory and Protein Evolution in Orthologous and Duplicate Genes
    Cristian I. Castillo-Davis
    Daniel L. Hartl
    Guillaume Achaz
    First Published July 15, 2004
  - Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia
    Aaron A. Best
    Hilary G. Morrison
    Andrew G. McArthur
    Mitchell L. Sogin
    Gary J. Olsen
    First Published August 2, 2004
  - Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum
    Richard M.R. Coulson
    Neil Hall
    Christos A. Ouzounis
    First Published July 15, 2004
  - Comparative Analysis of Gene Expression for Convergent Evolution of Camera Eye Between Octopus and Human
    Atsushi Ogura
    Kazuho Ikeo
    Takashi Gojobori
    First Published August 2, 2004
  - Clustering of DNA Sequences in Human Promoters
    Peter C. FitzGerald
    Andrey Shlyakhtenko
    Alain A. Mir
    Charles Vinson
    First Published July 15, 2004
  - Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters
    Huiquan Wang
    Michiel Noordewier
    Craig J. Benham
    First Published August 2, 2004
  - Early Genetic Mechanisms Underlying the Inhibitory Effects of Endostatin and Fumagillin on Human Endothelial Cells
    Chiara M. Mazzanti
    Anita Tandle
    Dominique Lorang
    Nick Costouros
    David Roberts
    First Published August 2, 2004
  - The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide
    Rituparna Mukhopadhyay
    WenQiang Yu
    Joanne Whitehead
    JunWang Xu
    Magda Lezcano
    Svetlana Pack Chandrasekhar Kanduri Meena Kanduri Vasudeva Ginjala Alexander Vostrov Wolfgang Quitschke
    ...[+6 authors]...,
    Igor Chernukhin
    Elena Klenova
    Victor Lobanenkov
    Rolf Ohlsson
    First Published July 15, 2004
Methods
- - Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
    Vincent Magrini
    Wesley C. Warren
    John Wallis
    William E. Goldman
    Jian Xu
    First Published August 2, 2004
  - Indel-Based Evolutionary Distance and Mouse–Human Divergence
    Aleksey Y. Ogurtsov
    Shamil Sunyaev
    Alexey S. Kondrashov
    First Published August 2, 2004
  - A Non-EST-Based Method for Exon-Skipping Prediction
    Rotem Sorek
    Ronen Shemesh
    Yuval Cohen
    Ortal Basechess
    Gil Ast
    First Published August 2, 2004
  - Haplotype and Missing Data Inference in Nuclear Families
    Shin Lin
    Aravinda Chakravarti
    David J. Cutler
    First Published July 15, 2004
  - Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies
    Bjarni V. Halldórsson
    Vineet Bafna
    Ross Lippert
    Russell Schwartz
    Francisco M. De La Vega
    First Published August 2, 2004
  - The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis
    Blake C. Meyers
    Shivakundan Singh Tej
    Tam H. Vu
    Christian D. Haudenschild
    Vikas Agrawal
    First Published August 2, 2004
  - Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data
    William A. Schmitt
    R. Michael Raab
    Gregory Stephanopoulos
    First Published August 2, 2004
RESOURCES
- - Large-Scale Validation of Single Nucleotide Polymorphisms in Gene Regions
    Matthew R. Nelson
    George Marnellos
    Stefan Kammerer
    Carolyn R. Hoyal
    Michael M. Shi
    First Published August 2, 2004
  - cpnDB: A Chaperonin Sequence Database
    Janet E. Hill
    Susanne L. Penny
    Kenneth G. Crowell
    Swee Han Goh
    Sean M. Hemmingsen
    First Published August 2, 2004

Table of Contents

Volume 14, Issue 8 | August 2004

ARTICLES

The Complete Genome and Proteome of Mycoplasma mobile

Regional Patterns of Gene Expression in Human and Chimpanzee Brains

LETTERS

Incongruent Patterns of Local and Global Genome Size Evolution in Cotton

Segmental Duplications Flank the Multiple Sclerosis Locus on Chromosome 17q

Segmental Phylogenetic Relationships of Inbred Mouse Strains Revealed by Fine-Scale Analysis of Sequence Variation Across 4.6 Mb of Mouse Genome

Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex

Comparative Evolutionary Genomics of Androgen-Binding Protein Genes

cis-Regulatory and Protein Evolution in Orthologous and Duplicate Genes

Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia

Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum

Comparative Analysis of Gene Expression for Convergent Evolution of Camera Eye Between Octopus and Human

Clustering of DNA Sequences in Human Promoters

Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters

Early Genetic Mechanisms Underlying the Inhibitory Effects of Endostatin and Fumagillin on Human Endothelial Cells

The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide

Methods

Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome

Indel-Based Evolutionary Distance and Mouse–Human Divergence

A Non-EST-Based Method for Exon-Skipping Prediction

Haplotype and Missing Data Inference in Nuclear Families

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis

Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data

RESOURCES

Large-Scale Validation of Single Nucleotide Polymorphisms in Gene Regions

cpnDB: A Chaperonin Sequence Database

Table of Contents

Volume 14, Issue 8 | August 2004

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ARTICLES

LETTERS

Methods

RESOURCES