Volume 14, Issue 6 | June 2004

Insight/Outlook
- - Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses
    Kenneth F. Manly
    Dan Nettleton
    J.T. Gene Hwang
    First Published June 1, 2004
ARTICLES
- - Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile
    Martin J. Lercher
    Jean-Vincent Chamary
    Laurence D. Hurst
    First Published June 1, 2004
  - The Small Chromosomes of Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes
    Bill Wickstead
    Klaus Ersfeld
    Keith Gull
    First Published June 1, 2004
LETTERS
- - Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1
    Nitin S. Baliga
    Sarah J. Bjork
    Richard Bonneau
    Min Pan
    Chika Iloanusi
    First Published May 12, 2004
  - Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli
    Vincent Daubin
    Howard Ochman
    First Published June 1, 2004
  - Comparative Genomic Hybridization Provides New Insights Into the Molecular Taxonomy of the Saccharomyces Sensu Stricto Complex
    Laura C. Edwards-Ingram
    Manda E. Gent
    David C. Hoyle
    Andrew Hayes
    Lubomira I. Stateva
    First Published June 1, 2004
  - A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling
    Tobili Y. Sam-Yellowe
    Laurence Florens
    Jeffrey R. Johnson
    Tongmin Wang
    Judith A. Drazba
    Karine G. Le Roch Yingyao Zhou
    ...[+2 authors]...,
    Serge Batalov
    Daniel J. Carucci
    Elizabeth A. Winzeler
    John R. Yates
    First Published May 12, 2004
  - Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
    Elizabeth J.B. Williams
    Dianna J. Bowles
    First Published June 1, 2004
  - Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages
    Dale J. Hedges
    Pauline A. Callinan
    Richard Cordaux
    Jinchuan Xing
    Erin Barnes
    First Published June 1, 2004
  - Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping
    Michael F. Seldin
    Takanobu Morii
    Heather E. Collins-Schramm
    Bill Chima
    Rick Kittles
    First Published May 12, 2004
  - Coexpression Analysis of Human Genes Across Many Microarray Data Sets
    Homin K. Lee
    Amy K. Hsu
    Jon Sajdak
    Jie Qin
    Paul Pavlidis
    First Published June 1, 2004
Methods
- - Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone
    Cedric Simillion
    Klaas Vandepoele
    Yvan Saeys
    Yves Van de Peer
    First Published June 1, 2004
  - Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
    Haiyuan Yu
    Nicholas M. Luscombe
    Hao Xin Lu
    Xiaowei Zhu
    Yu Xia
    Jing-Dong J. Han
    ...[+1 authors]...,
    Nicolas Bertin
    Sambath Chung
    Marc Vidal
    Mark Gerstein
    First Published June 1, 2004
  - Recombinatorial Cloning Using Heterologous Lox Sites
    Robert W. Siegel
    Nileena Velappan
    Peter Pavlik
    Leslie Chasteen
    Andrew Bradbury
    First Published June 1, 2004
  - Automatic Identification of Subcellular Phenotypes on Human Cell Arrays
    Christian Conrad
    Holger Erfle
    Patrick Warnat
    Nathalie Daigle
    Thomas Lörch
    First Published June 1, 2004
  - DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags
    Eugene Y. Chan
    Nuno M. Goncalves
    Rebecca A. Haeusler
    Amie J. Hatch
    Jonathan W. Larson
    Anthony M. Maletta Gregory R. Yantz Eugene D. Carstea
    ...[+3 authors]...,
    Martin Fuchs
    Gordon G. Wong
    Steven R. Gullans
    Rudolf Gilmanshin
    First Published June 1, 2004
  - Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
    Bastien Chevreux
    Thomas Pfisterer
    Bernd Drescher
    Albert J. Driesel
    Werner E.G. Müller
    First Published May 12, 2004
  - Visualizing Sequence Similarity of Protein Families
    Vamsi Veeramachaneni
    Wojciech Makałowski
    First Published May 12, 2004
  - Predicting Protein Complex Membership Using Probabilistic Network Reliability
    Saurabh Asthana
    Oliver D. King
    Francis D. Gibbons
    Frederick P. Roth
    First Published May 12, 2004
RESOURCES
- - Complete MHC Haplotype Sequencing for Common Disease Gene Mapping
    C. Andrew Stewart
    Roger Horton
    Richard J.N. Allcock
    Jennifer L. Ashurst
    Alexey M. Atrazhev
    Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
    ...[+17 authors]...,
    Stephen Sawcer
    John A. Todd
    John Trowsdale
    Stephan Beck
    First Published May 12, 2004
  - WebLogo: A Sequence Logo Generator
    Gavin E. Crooks
    Gary Hon
    John-Marc Chandonia
    Steven E. Brenner
    First Published June 1, 2004
  - eShadow: A Tool for Comparing Closely Related Sequences
    Ivan Ovcharenko
    Dario Boffelli
    Gabriela G. Loots
    First Published June 1, 2004
  - Large-Scale Integration of Human Genetic and Physical Maps
    Caroline M. Nievergelt
    Douglas W. Smith
    J. Bradley Kohlenberg
    Nicholas J. Schork
    First Published May 12, 2004

Table of Contents

Volume 14, Issue 6 | June 2004

Insight/Outlook

Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses

ARTICLES

Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile

The Small Chromosomes of Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes

LETTERS

Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1

Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli

Comparative Genomic Hybridization Provides New Insights Into the Molecular Taxonomy of the Saccharomyces Sensu Stricto Complex

A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling

Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana

Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping

Coexpression Analysis of Human Genes Across Many Microarray Data Sets

Methods

Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

Recombinatorial Cloning Using Heterologous Lox Sites

Automatic Identification of Subcellular Phenotypes on Human Cell Arrays

DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags

Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs

Visualizing Sequence Similarity of Protein Families

Predicting Protein Complex Membership Using Probabilistic Network Reliability

RESOURCES

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

WebLogo: A Sequence Logo Generator

eShadow: A Tool for Comparing Closely Related Sequences

Large-Scale Integration of Human Genetic and Physical Maps

Table of Contents

Volume 14, Issue 6 | June 2004

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Insight/Outlook

ARTICLES

LETTERS

Methods

RESOURCES