Table of Contents

June 2004; 14 (6)

Insight/Outlook

  • Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses

    • Kenneth F. Manly,
    • Dan Nettleton,
    • and J.T. Gene Hwang
    Genome Res. June 2004 14: 997-1001; doi:10.1101/gr.2156804

ARTICLES

  • Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile

    • Martin J. Lercher,
    • Jean-Vincent Chamary,
    • and Laurence D. Hurst
    Genome Res. June 2004 14: 1002-1013; doi:10.1101/gr.1597404

  • The Small Chromosomes of Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes

    • Bill Wickstead,
    • Klaus Ersfeld,
    • and Keith Gull
    Genome Res. June 2004 14: 1014-1024; doi:10.1101/gr.2227704

LETTERS

  • Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1

    • Nitin S. Baliga,
    • Sarah J. Bjork,
    • Richard Bonneau,
    • Min Pan,
    • Chika Iloanusi,
    • Molly C.H. Kottemann,
    • Leroy Hood,
    • and Jocelyne DiRuggiero
    Genome Res. June 2004 14: 1025-1035; Published in Advance May 12, 2004, doi:10.1101/gr.1993504

  • Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli

    • Vincent Daubin and
    • Howard Ochman
    Genome Res. June 2004 14: 1036-1042; doi:10.1101/gr.2231904

  • Comparative Genomic Hybridization Provides New Insights Into the Molecular Taxonomy of the Saccharomyces Sensu Stricto Complex

    • Laura C. Edwards-Ingram,
    • Manda E. Gent,
    • David C. Hoyle,
    • Andrew Hayes,
    • Lubomira I. Stateva,
    • and Stephen G. Oliver
    Genome Res. June 2004 14: 1043-1051; doi:10.1101/gr.2114704

  • A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling

    • Tobili Y. Sam-Yellowe,
    • Laurence Florens,
    • Jeffrey R. Johnson,
    • Tongmin Wang,
    • Judith A. Drazba,
    • Karine G. Le Roch,
    • Yingyao Zhou,
    • Serge Batalov,
    • Daniel J. Carucci,
    • Elizabeth A. Winzeler,
    • and John R. Yates III
    Genome Res. June 2004 14: 1052-1059; Published in Advance May 12, 2004, doi:10.1101/gr.2126104

  • Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana

    • Elizabeth J.B. Williams and
    • Dianna J. Bowles
    Genome Res. June 2004 14: 1060-1067; doi:10.1101/gr.2131104

  • Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

    • Dale J. Hedges,
    • Pauline A. Callinan,
    • Richard Cordaux,
    • Jinchuan Xing,
    • Erin Barnes,
    • and Mark A. Batzer
    Genome Res. June 2004 14: 1068-1075; doi:10.1101/gr.2530404

  • Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping

    • Michael F. Seldin,
    • Takanobu Morii,
    • Heather E. Collins-Schramm,
    • Bill Chima,
    • Rick Kittles,
    • Lindsey A. Criswell,
    • and Hongzhe Li
    Genome Res. June 2004 14: 1076-1084; Published in Advance May 12, 2004, doi:10.1101/gr.2165904

  • Coexpression Analysis of Human Genes Across Many Microarray Data Sets

    • Homin K. Lee,
    • Amy K. Hsu,
    • Jon Sajdak,
    • Jie Qin,
    • and Paul Pavlidis
    Genome Res. June 2004 14: 1085-1094; doi:10.1101/gr.1910904

Methods

  • Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone

    • Cedric Simillion,
    • Klaas Vandepoele,
    • Yvan Saeys,
    • and Yves Van de Peer
    Genome Res. June 2004 14: 1095-1106; doi:10.1101/gr.2179004

  • Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

    • Haiyuan Yu,
    • Nicholas M. Luscombe,
    • Hao Xin Lu,
    • Xiaowei Zhu,
    • Yu Xia,
    • Jing-Dong J. Han,
    • Nicolas Bertin,
    • Sambath Chung,
    • Marc Vidal,
    • and Mark Gerstein
    Genome Res. June 2004 14: 1107-1118; doi:10.1101/gr.1774904

  • Recombinatorial Cloning Using Heterologous Lox Sites

    • Robert W. Siegel,
    • Nileena Velappan,
    • Peter Pavlik,
    • Leslie Chasteen,
    • and Andrew Bradbury
    Genome Res. June 2004 14: 1119-1129; doi:10.1101/gr.1821804

  • Automatic Identification of Subcellular Phenotypes on Human Cell Arrays

    • Christian Conrad,
    • Holger Erfle,
    • Patrick Warnat,
    • Nathalie Daigle,
    • Thomas Lörch,
    • Jan Ellenberg,
    • Rainer Pepperkok,
    • and Roland Eils
    Genome Res. June 2004 14: 1130-1136; doi:10.1101/gr.2383804

  • DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags

    • Eugene Y. Chan,
    • Nuno M. Goncalves,
    • Rebecca A. Haeusler,
    • Amie J. Hatch,
    • Jonathan W. Larson,
    • Anthony M. Maletta,
    • Gregory R. Yantz,
    • Eugene D. Carstea,
    • Martin Fuchs,
    • Gordon G. Wong,
    • Steven R. Gullans,
    • and Rudolf Gilmanshin
    Genome Res. June 2004 14: 1137-1146; doi:10.1101/gr.1635204

  • Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs

    • Bastien Chevreux,
    • Thomas Pfisterer,
    • Bernd Drescher,
    • Albert J. Driesel,
    • Werner E.G. Müller,
    • Thomas Wetter,
    • and Sándor Suhai
    Genome Res. June 2004 14: 1147-1159; Published in Advance May 12, 2004, doi:10.1101/gr.1917404

  • Visualizing Sequence Similarity of Protein Families

    • Vamsi Veeramachaneni and
    • Wojciech Makałowski
    Genome Res. June 2004 14: 1160-1169; Published in Advance May 12, 2004, doi:10.1101/gr.2079204

  • Predicting Protein Complex Membership Using Probabilistic Network Reliability

    • Saurabh Asthana,
    • Oliver D. King,
    • Francis D. Gibbons,
    • and Frederick P. Roth
    Genome Res. June 2004 14: 1170-1175; Published in Advance May 12, 2004, doi:10.1101/gr.2203804

RESOURCES

  • Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

    • C. Andrew Stewart,
    • Roger Horton,
    • Richard J.N. Allcock,
    • Jennifer L. Ashurst,
    • Alexey M. Atrazhev,
    • Penny Coggill,
    • Ian Dunham,
    • Simon Forbes,
    • Karen Halls,
    • Joanna M.M. Howson,
    • Sean J. Humphray,
    • Sarah Hunt,
    • Andrew J. Mungall,
    • Kazutoyo Osoegawa,
    • Sophie Palmer,
    • Anne N. Roberts,
    • Jane Rogers,
    • Sarah Sims,
    • Yu Wang,
    • Laurens G. Wilming,
    • John F. Elliott,
    • Pieter J. de Jong,
    • Stephen Sawcer,
    • John A. Todd,
    • John Trowsdale,
    • and Stephan Beck
    Genome Res. June 2004 14: 1176-1187; Published in Advance May 12, 2004, doi:10.1101/gr.2188104

  • WebLogo: A Sequence Logo Generator

    • Gavin E. Crooks,
    • Gary Hon,
    • John-Marc Chandonia,
    • and Steven E. Brenner
    Genome Res. June 2004 14: 1188-1190; doi:10.1101/gr.849004

  • eShadow: A Tool for Comparing Closely Related Sequences

    • Ivan Ovcharenko,
    • Dario Boffelli,
    • and Gabriela G. Loots
    Genome Res. June 2004 14: 1191-1198; doi:10.1101/gr.1773104

  • Large-Scale Integration of Human Genetic and Physical Maps

    • Caroline M. Nievergelt,
    • Douglas W. Smith,
    • J. Bradley Kohlenberg,
    • and Nicholas J. Schork
    Genome Res. June 2004 14: 1199-1205; Published in Advance May 12, 2004, doi:10.1101/gr.1475304
|

This Issue

June 2004; 14 (6)
Cover
  1. Insight/Outlook
  2. ARTICLES
  3. LETTERS
  4. Methods
  5. RESOURCES

Find articles in this issue containing these words:

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research