Volume 12, Issue 7 | July 2002

INSIGHT/OUTLOOK
- - Genomics: More Than the Sum of the Parts
    Pablo D. Rabinowicz
    Ravi Scahidanandam
    First Published July 1, 2002
  - Fly Factory
    Brian Oliver
    First Published July 1, 2002
ARTICLE
- - Computation-Based Discovery of Related Transcriptional Regulatory Modules and Motifs Using an Experimentally Validated Combinatorial Model
    Marc S. Halfon
    Yonatan Grad
    George M. Church
    Alan M. Michelson
    First Published July 1, 2002
LETTERS
- - Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene
    Armand J. MacMurray
    Daniel H. Moralejo
    Anne E. Kwitek
    Elizabeth A. Rutledge
    Brian Van Yserloo
    Paul Gohlke Sara J. Speros Ben Snyder Jonathan Schaefer Sabine Bieg Jianjie Jiang Ruth A. Ettinger Jessica Fuller Terri L. Daniels Anna Pettersson Kimberly Orlebeke
    ...[+11 authors]...,
    Bruce Birren
    Howard J. Jacob
    Eric S. Lander
    Åke Lernmark
    First Published July 1, 2002
  - Profiling Patterned Transcripts in Drosophila Embryos
    Karl Simin
    Anne Scuderi
    James Reamey
    Diane Dunn
    Robert Weiss
    First Published July 1, 2002
  - The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
    Olivier Lespinet
    Yuri I. Wolf
    Eugene V. Koonin
    L. Aravind
    First Published July 1, 2002
  - Alu-Containing Exons are Alternatively Spliced
    Rotem Sorek
    Gil Ast
    Dan Graur
    First Published July 1, 2002
  - Long-Range Heterogeneity at the 3′ Ends of Human mRNAs
    Christian Iseli
    Brian J. Stevenson
    Sandro J. de Souza
    Helena B. Samaia
    Anamaria A. Camargo
    Kenneth H. Buetow
    ...[+1 authors]...,
    Robert L. Strausberg
    Andrew J.G. Simpson
    Philipp Bucher
    C. Victor Jongeneel
    First Published June 18, 2002
  - Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis
    Katrien M. Devos
    James K.M. Brown
    Jeffrey L. Bennetzen
    First Published July 1, 2002
  - A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History
    Vincent Daubin
    Manolo Gouy
    Guy Perrière
    First Published July 1, 2002
  - Transcript Profiling of Functionally Related Groups of Genes During Conditional Differentiation of a Mammalian Cochlear Hair Cell Line
    Marcelo N. Rivolta
    Antony Halsall
    Claire M. Johnson
    Michael A. Tones
    Matthew C. Holley
    First Published July 1, 2002
METHODS
- - High-Throughput Gene Mapping in Caenorhabditis elegans
    Kathryn A. Swan
    Damian E. Curtis
    Kathleen B. McKusick
    Alexander V. Voinov
    Felipa A. Mapa
    First Published July 1, 2002
  - Single Nucleotide Polymorphism Mapping Using Genome-Wide Unique Sequences
    Leslie Y.Y. Chen
    Szu-Hsien Lu
    Edward S.C. Shih
    Ming-Jing Hwang
    First Published June 18, 2002
  - Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space
    Jatin Misra
    William Schmitt
    Daehee Hwang
    Li-Li Hsiao
    Steve Gullans
    First Published July 1, 2002
  - Pathway Processor: A Tool for Integrating Whole-Genome Expression Results into Metabolic Networks
    Paul Grosu
    Jeffrey P. Townsend
    Daniel L. Hartl
    Duccio Cavalieri
    First Published July 1, 2002
  - A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs
    Naoki Osato
    Masayoshi Itoh
    Hideaki Konno
    Shinji Kondo
    Kazuhiro Shibata
    Piero Carninci Toshiyuki Shiraki Akira Shinagawa Takahiro Arakawa
    ...[+4 authors]...,
    Shoshi Kikuchi
    Kouji Sato
    Jun Kawai
    Yoshihide Hayashizaki
    First Published June 18, 2002
  - Validation of DNA Sequences Using Mass Spectrometry Coupled with Nucleoside Mass Tagging
    Fadi A. Abdi
    Mark Mundt
    Norman Doggett
    E. Morton Bradbury
    Xian Chen
    First Published July 1, 2002
RESOURCE
- - GFScan: A Gene Family Search Tool at Genomic DNA Level
    Zhenyu Xuan
    W. Richard McCombie
    Michael Q. Zhang
    First Published June 18, 2002

Table of Contents

Volume 12, Issue 7 | July 2002

INSIGHT/OUTLOOK

Genomics: More Than the Sum of the Parts

Fly Factory

ARTICLE

Computation-Based Discovery of Related Transcriptional Regulatory Modules and Motifs Using an Experimentally Validated Combinatorial Model

LETTERS

Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene

Profiling Patterned Transcripts in Drosophila Embryos

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

Alu-Containing Exons are Alternatively Spliced

Long-Range Heterogeneity at the 3′ Ends of Human mRNAs

Genome Size Reduction through Illegitimate Recombination Counteracts Genome Expansion in Arabidopsis

A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History

Transcript Profiling of Functionally Related Groups of Genes During Conditional Differentiation of a Mammalian Cochlear Hair Cell Line

METHODS

High-Throughput Gene Mapping in Caenorhabditis elegans

Single Nucleotide Polymorphism Mapping Using Genome-Wide Unique Sequences

Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space

Pathway Processor: A Tool for Integrating Whole-Genome Expression Results into Metabolic Networks

A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs

Validation of DNA Sequences Using Mass Spectrometry Coupled with Nucleoside Mass Tagging

RESOURCE

GFScan: A Gene Family Search Tool at Genomic DNA Level

Table of Contents

Volume 12, Issue 7 | July 2002

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INSIGHT/OUTLOOK

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RESOURCE