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Tetrahymena thermophila" > Rearrangement of macronucleus chromosomes correspond to TAD-like structures of micronucleus chromosomes in Tetrahymena thermophila

  • First Published March 12, 2020

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • First Published July 27, 2011

Genome-wide identification of conserved regulatory function in diverged sequences

  • First Published May 31, 2011

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • First Published November 3, 2009

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • First Published January 12, 2009

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • First Published September 25, 2008

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • First Published November 5, 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • First Published June 13, 2007

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • First Published June 13, 2007

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • First Published June 13, 2007

Using genomic data to unravel the root of the placental mammal phylogeny

  • First Published February 23, 2007

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • First Published October 19, 2006

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • First Published October 12, 2006

Reconstructing contiguous regions of an ancestral genome

  • First Published September 18, 2006

Galaxy: A platform for interactive large-scale genome analysis

  • First Published September 16, 2005

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

  • First Published July 15, 2005

Mulan: Multiple-sequence local alignment and visualization for studying function and evolution

  • First Published December 8, 2004

Evolution and functional classification of vertebrate gene deserts

  • First Published December 8, 2004

Reconstructing large regions of an ancestral mammalian genome in silico

  • First Published December 1, 2004

Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

  • First Published April 1, 2004

Comparative Analysis of the α-Like Globin Clusters in Mouse, Rat, and Human Chromosomes Indicates a Mechanism Underlying Breaks in Conserved Synteny

  • First Published April 1, 2004

Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat

  • First Published April 1, 2004

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

  • First Published April 1, 2004

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

  • First Published March 1, 2004

GALA, a Database for Genomic Sequence Alignments and Annotations

  • First Published April 1, 2003

Distinguishing Regulatory DNA From Neutral Sites

  • First Published January 1, 2003

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

  • First Published January 1, 2003

Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels

  • First Published January 1, 2003

Human–Mouse Alignments with BLASTZ

  • First Published December 30, 2002

3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome " > Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome

  • First Published January 1, 2002

Sequence and Comparative Analysis of the Mouse 1-Megabase Region Orthologous to the Human 11p15 Imprinted Domain

  • First Published November 1, 2000

Naip Gene Array" > Genomic Sequence Analysis of the Mouse Naip Gene Array

  • First Published August 1, 2000

PipMaker—A Web Server for Aligning Two Genomic DNA Sequences

  • First Published April 1, 2000

mnd2 Region of Chromosome 2p13" > Comparative Sequence of Human and Mouse BAC Clones from the mnd2 Region of Chromosome 2p13

  • First Published January 1, 1999

Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies

  • First Published October 1, 1998

A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence

  • First Published September 1, 1998

Comparative Sequence Analysis of a Gene-Rich Cluster at Human Chromosome 12p13 and its Syntenic Region in Mouse Chromosome 6

  • First Published January 1, 1998

Large-Scale Comparative Sequence Analysis of the Human and Murine Bruton’s Tyrosine Kinase Loci Reveals Conserved Regulatory Domains

  • First Published April 1, 1997
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