Research
Enhancers with tissue-specific activity are enriched in intronic regions
- First Published July 21, 2021
Corrigendum
Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published September 14, 2020
Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published July 27, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Research
Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration
- First Published November 20, 2018
Method
Read clouds uncover variation in complex regions of the human genome
- First Published August 18, 2015
Research
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization
- First Published July 20, 2015
Method
Parente2: a fast and accurate method for detecting identity by descent
- First Published October 1, 2014
Research
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
- First Published November 21, 2013
Method
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Method
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- First Published September 5, 2012
Method
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Method
Estimation of alternative splicing variability in human populations
- First Published November 23, 2011
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
RECOMB Special/Methods
Effect of genetic divergence in identifying ancestral origin using HAPAA
- First Published March 18, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
LETTER
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Græmlin: General and robust alignment of multiple large interaction networks
- First Published August 9, 2006
LETTER
Tandem chimerism as a means to increase protein complexity in the human genome
- First Published December 12, 2005
ARTICLE
Distribution and intensity of constraint in mammalian genomic sequence
- First Published June 17, 2005
RESOURCE
ProbCons: Probabilistic consistency-based multiple sequence alignment
- First Published February 1, 2005
Chicken Special/Letters
Comparison of splice sites in mammals and chicken
- First Published December 8, 2004
Methods
Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human
- First Published April 1, 2004
LETTER
Comparative Analysis of Amino Acid Repeats in Rodents and Humans
- First Published April 1, 2004
LETTER
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
- First Published April 1, 2004
Methods
Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
- First Published March 1, 2004
Methods
Identification of Promoter Regions in the Human Genome by Using a Retroviral Plasmid Library-Based Functional Reporter Gene Assay
- First Published June 12, 2003
LETTER
Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
- First Published May 1, 2003
METHODS
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- First Published March 12, 2003
METHODS
SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments
- First Published September 1, 2001
LETTER
Kua, a Newly Identified Gene" > Fusion of the Human Gene for the Polyubiquitination Coeffector UEV1 with Kua, a Newly Identified Gene
- First Published November 8, 2000
METHODS
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
- First Published October 1, 2000
LETTER
Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
- First Published July 1, 2000
RESEARCH
Sequencing a Genome by Walking with Clone-End Sequences: A Mathematical Analysis
- First Published December 1, 1999