Method
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
- First Published August 12, 2022
Research
Embryonic LTR retrotransposons supply promoter modules to somatic tissues
- First Published October 21, 2021
Research
Antisense RNAs during early vertebrate development are divided in groups with distinct features
- First Published April 1, 2021
Research
Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
- First Published November 18, 2020
Corrigendum
Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published September 14, 2020
Resource
Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published July 27, 2020
Corrigendum
Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
- First Published January 9, 2020
Resource
Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
- First Published February 13, 2019
Method
SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA
- First Published November 7, 2018
Research
Macaca mulatta) based on whole-genome sequences" > The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
- First Published October 17, 2016
Research
Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young
- First Published July 19, 2016
Insight/Outlook
The ethics of conducting molecular autopsies in cases of sudden death in the young
- First Published July 13, 2016
Research
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
- First Published October 28, 2015
Research
The frequent evolutionary birth and death of functional promoters in mouse and human
- First Published July 30, 2015
Research
Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
- First Published September 16, 2014
Resource
D. melanogaster modENCODE transcriptome annotation" > Comparative validation of the D. melanogaster modENCODE transcriptome annotation
- First Published July 1, 2014
Resource
Digital expression profiling of the compartmentalized translatome of Purkinje neurons
- First Published June 5, 2014
Method
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
- First Published March 27, 2014
Resource
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
- First Published September 3, 2013
Method
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data
- First Published January 7, 2013
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Method
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- First Published August 30, 2012
Method
Unamplified cap analysis of gene expression on a single-molecule sequencer
- First Published May 19, 2011
Research
Drosophila melanogaster" > Genome-wide analysis of promoter architecture in Drosophila melanogaster
- First Published December 22, 2010
Research
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010
Methods
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- First Published January 5, 2010
Resource
A SNP discovery method to assess variant allele probability from next-generation resequencing data
- First Published December 17, 2009
Methods
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- First Published December 11, 2008
LETTER
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
- First Published December 3, 2008
RESOURCE
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
COMMENTARY
Community annotation: Procedures, protocols, and supporting tools
- First Published October 25, 2006
LETTER
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
- First Published October 25, 2006
ARTICLE
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Methods
Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
- First Published February 1, 2005
LETTER
Genomic Analysis of the Nuclear Receptor Family: New Insights Into Structure, Regulation, and Evolution From the Rat Genome
- First Published April 1, 2004
Methods
Identification of Rat Genes by TWINSCAN Gene Prediction, RT–PCR, and Direct Sequencing
- First Published April 1, 2004
Methods
Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project
- First Published April 1, 2004
LETTER
Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage
- First Published June 2, 2003
LETTER
Analysis of the Mouse Transcriptome for Genes Involved in the Function of the Nervous System
- First Published June 2, 2003
ARTICLE
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- First Published June 2, 2003
RESOURCE
Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
- First Published July 19, 2002
METHODS
A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs
- First Published June 18, 2002
LETTER
Comparing Vertebrate Whole-Genome Shotgun Reads to the Human Genome
- First Published November 1, 2001
PERSPECTIVE
A Clone-Array Pooled Shotgun Strategy for Sequencing Large Genomes
- First Published October 1, 2001
METHODS
Computer-Based Methods for the Mouse Full-Length cDNA Encyclopedia: Real-Time Sequence Clustering for Construction of a Nonredundant cDNA Library
- First Published January 18, 2001
LETTER
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
- First Published November 1, 2000
METHODS
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
- First Published October 1, 2000
LETTER
Automated Filtration-Based High-Throughput Plasmid Preparation System
- First Published May 1, 1999
GENOME METHODS
Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies
- First Published October 1, 1998
RESEARCH
Comparative Sequence Analysis of a Gene-Rich Cluster at Human Chromosome 12p13 and its Syntenic Region in Mouse Chromosome 6
- First Published January 1, 1998
RESEARCH
Large-Scale Comparative Sequence Analysis of the Human and Murine Bruton’s Tyrosine Kinase Loci Reveals Conserved Regulatory Domains
- First Published April 1, 1997