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Method

True single-molecule DNA sequencing of a pleistocene horse bone

  • Ludovic Orlando
  • Aurelien Ginolhac
  • Maanasa Raghavan
  • Julia Vilstrup
  • Morten Rasmussen
  • Kim Magnussen Kathleen E. Steinmann Philipp Kapranov John F. Thompson Grant Zazula Duane Froese Ida Moltke Beth Shapiro
  • ... [+8 authors] ...,
  • Michael Hofreiter
  • Khaled A.S. Al-Rasheid
  • M. Thomas P. Gilbert
  • Eske Willerslev
  • First Published July 29, 2011
Method

BRCA1 mutations" > Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations

  • John F. Thompson
  • Jeffrey G. Reifenberger
  • Eldar Giladi
  • Kristen Kerouac
  • Jaime Gill
  • Erik Hansen Avak Kahvejian Philipp Kapranov
  • ... [+3 authors] ...,
  • Travis Knope
  • Doron Lipson
  • Kathleen E. Steinmann
  • Patrice M. Milos
  • First Published July 15, 2011
Resource

Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines

  • Lucy Cherbas
  • Aarron Willingham
  • Dayu Zhang
  • Li Yang
  • Yi Zou
  • Brian D. Eads Joseph W. Carlson Jane M. Landolin Philipp Kapranov Jacqueline Dumais Anastasia Samsonova Jeong-Hyeon Choi Johnny Roberts Carrie A. Davis Haixu Tang Marijke J. van Baren Srinka Ghosh Alexander Dobin Kim Bell Wei Lin Laura Langton Michael O. Duff Aaron E. Tenney Chris Zaleski Michael R. Brent Roger A. Hoskins Thomas C. Kaufman Justen Andrews Brenton R. Graveley
  • ... [+24 authors] ...,
  • Norbert Perrimon
  • Susan E. Celniker
  • Thomas R. Gingeras
  • Peter Cherbas
  • First Published December 22, 2010
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

  • Alvaro Rada-Iglesias
  • Adam Ameur
  • Philipp Kapranov
  • Stefan Enroth
  • Jan Komorowski
  • Thomas R. Gingeras
  • Claes Wadelius
  • First Published January 29, 2008
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • France Denoeud
  • Philipp Kapranov
  • Catherine Ucla
  • Adam Frankish
  • Robert Castelo
  • Jorg Drenkow Julien Lagarde Tyler Alioto Caroline Manzano Jacqueline Chrast Sujit Dike Carine Wyss Charlotte N. Henrichsen Nancy Holroyd Mark C. Dickson Ruth Taylor Zahra Hance Sylvain Foissac Richard M. Myers Jane Rogers Tim Hubbard Jennifer Harrow
  • ... [+17 authors] ...,
  • Roderic Guigó
  • Thomas R. Gingeras
  • Stylianos E. Antonarakis
  • Alexandre Reymond
  • First Published June 13, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
Methods

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

  • Philipp Kapranov
  • Jorg Drenkow
  • Jill Cheng
  • Jeffrey Long
  • Gregg Helt
  • Sujit Dike
  • Thomas R. Gingeras
  • First Published July 5, 2005
ARTICLE

Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

  • Dione Kampa
  • Jill Cheng
  • Philipp Kapranov
  • Mark Yamanaka
  • Shane Brubaker
  • Simon Cawley Jorg Drenkow Antonio Piccolboni
  • ... [+3 authors] ...,
  • Stefan Bekiranov
  • Gregg Helt
  • Hari Tammana
  • Thomas R. Gingeras
  • First Published March 1, 2004
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