Research
Oikopleura dioica cryptic species" > Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species
- First Published April 15, 2024
Research
Meta-analysis of human and mouse ALS astrocytes reveals multi-omic signatures of inflammatory reactive states
- First Published December 28, 2021
Method
Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes
- First Published May 16, 2019
Research
Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
- First Published April 4, 2018
Method
Read clouds uncover variation in complex regions of the human genome
- First Published August 18, 2015
Resource
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- First Published March 9, 2015
Method
Parente2: a fast and accurate method for detecting identity by descent
- First Published October 1, 2014
Method
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Method
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast
- First Published September 19, 2011
Method
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
- First Published April 8, 2010
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
LETTER
E. coli" > Principles of transcriptional regulation and evolution of the metabolic system in E. coli
- First Published October 3, 2008
RECOMB Special/Methods
Effect of genetic divergence in identifying ancestral origin using HAPAA
- First Published March 18, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Methods
Græmlin: General and robust alignment of multiple large interaction networks
- First Published August 9, 2006
ARTICLE
Distribution and intensity of constraint in mammalian genomic sequence
- First Published June 17, 2005
RESOURCE
ProbCons: Probabilistic consistency-based multiple sequence alignment
- First Published February 1, 2005
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
Methods
Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human
- First Published April 1, 2004
LETTER
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
- First Published April 1, 2004
Methods
Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
- First Published March 1, 2004
Methods
Identification of Promoter Regions in the Human Genome by Using a Retroviral Plasmid Library-Based Functional Reporter Gene Assay
- First Published June 12, 2003
LETTER
Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
- First Published May 1, 2003
METHODS
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- First Published March 12, 2003
LETTER
Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
- First Published February 1, 2002
INSIGHT/OUTLOOK
Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function
- First Published September 1, 2001
LETTER
Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
- First Published July 1, 2000
RESEARCH
Sequencing a Genome by Walking with Clone-End Sequences: A Mathematical Analysis
- First Published December 1, 1999