Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
- First Published August 16, 2024
cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements
- First Published April 17, 2024
Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells
- First Published October 18, 2023
Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
- First Published June 6, 2022
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands
- First Published April 20, 2021
A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS
- First Published April 2, 2019
Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
- First Published December 1, 2017
A genome-wide interactome of DNA-associated proteins in the human liver
- First Published October 11, 2017
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins
- First Published September 9, 2015
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
- First Published December 3, 2013
Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
- First Published October 29, 2013
Dynamic DNA methylation across diverse human cell lines and tissues
- First Published January 16, 2013
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
- First Published September 26, 2012
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
- First Published September 5, 2012
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Annotation of functional variation in personal genomes using RegulomeDB
- First Published September 5, 2012
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- First Published September 5, 2012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
- First Published February 2, 2012
DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
- First Published April 26, 2011
CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- First Published February 7, 2011
C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
- First Published December 22, 2010
C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- First Published December 22, 2010
Sequence features that drive human promoter function and tissue specificity
- First Published May 25, 2010
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
- First Published October 2, 2009
Signals of recent positive selection in a worldwide sample of human populations
- First Published March 23, 2009
MSB: A mean-shift-based approach for the analysis of structural variation in the genome
- First Published November 26, 2008
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
- First Published September 11, 2008
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
- First Published June 13, 2007
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
- First Published June 13, 2007
Transcription factor binding and modified histones in human bidirectional promoters
- First Published June 13, 2007
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
- First Published June 13, 2007
Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)
- First Published June 13, 2007
Serum response factor binding sites differ in three human cell types
- First Published January 2, 2007
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
- First Published November 21, 2006
Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
- First Published September 8, 2006
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
- First Published December 12, 2005
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
- First Published November 15, 2004
Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon
- First Published October 1, 2004
Gene Conversion and the Evolution of Protocadherin Gene Cluster Diversity
- First Published March 1, 2004
Identification and Functional Analysis of Human Transcriptional Promoters
- First Published February 1, 2003
Rapid Mapping of Zebrafish Mutations With SNPs and Oligonucleotide Microarrays
- First Published December 1, 2002
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
- First Published March 1, 2001
The End of the Beginning: The Race to Begin Human Genome Sequencing
- First Published September 1, 1996