Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics
- First Published November 15, 2017
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Research
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
- First Published August 19, 2015
Method
Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
- First Published July 22, 2013
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Method
Copy-number-aware differential analysis of quantitative DNA sequencing data
- First Published August 9, 2012
Method
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
- First Published March 30, 2012