Research
Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation
- First Published December 5, 2024
Method
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
- First Published August 12, 2022
Research
High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma
- First Published June 27, 2019
Research
The frequent evolutionary birth and death of functional promoters in mouse and human
- First Published July 30, 2015
Method
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
- First Published July 24, 2014
Method
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
- First Published March 27, 2014
Method
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
- First Published June 26, 2013
Method
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
- First Published June 26, 2013
Research
Extensive relationship between antisense transcription and alternative splicing in the human genome
- First Published June 30, 2011
Method
Unamplified cap analysis of gene expression on a single-molecule sequencer
- First Published May 19, 2011
Research
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
- First Published December 22, 2010
Research
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
- First Published June 15, 2010
Methods
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- First Published January 5, 2010
Methods
Next-generation tag sequencing for cancer gene expression profiling
- First Published June 18, 2009
Methods
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- First Published December 11, 2008
LETTER
In-depth characterization of the microRNA transcriptome in a leukemia progression model
- First Published October 10, 2008
LETTER
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
- First Published September 11, 2008
Methods
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
- First Published February 19, 2008
LETTER
Identification and analysis of internal promoters in Caenorhabditis elegans operons
- First Published August 21, 2007
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
Methods
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines
- First Published November 29, 2006
LETTER
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
- First Published December 19, 2005
ARTICLE
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
- First Published December 12, 2005
Methods
Simple, robust methods for high-throughput nanoliter-scale DNA sequencing
- First Published September 16, 2005
ARTICLE
Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression
- First Published April 18, 2005
ARTICLE
Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized
- First Published March 21, 2005
Methods
Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
- First Published October 15, 2004
RESOURCE
Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics
- First Published February 12, 2004
LETTER
The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment
- First Published June 2, 2003
LETTER
Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
- First Published June 2, 2003
LETTER
Comprehensive Analysis of the Mouse Metabolome Based on the Transcriptome
- First Published June 2, 2003
RESOURCE
Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System
- First Published June 2, 2003
LETTER
Analysis of the Mouse Transcriptome for Genes Involved in the Function of the Nervous System
- First Published June 2, 2003
LETTER
Discovery of Imprinted Transcripts in the Mouse Transcriptome Using Large-Scale Expression Profiling
- First Published June 2, 2003
ARTICLE
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- First Published June 2, 2003
RESOURCE
The Mammalian Protein–Protein Interaction Database and Its Viewing System That Is Linked to the Main FANTOM2 Viewer
- First Published June 2, 2003
ARTICLE
Impact of Alternative Initiation, Splicing, and Termination on the Diversity of the mRNA Transcripts Encoded by the Mouse Transcriptome
- First Published June 2, 2003