Resource
C. elegans" > The time-resolved transcriptome of C. elegans
- First Published August 16, 2016
Resource
Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)
- First Published September 16, 2015
Research
Evolution and diversity of copy number variation in the great ape lineage
- First Published July 3, 2013
Resource
Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans
- First Published June 25, 2013
Research
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Method
Genome-wide identification of conserved regulatory function in diverged sequences
- First Published May 31, 2011
Research
C. elegans trans-splicing" > A global analysis of C. elegans trans-splicing
- First Published December 22, 2010
Method
C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- First Published December 22, 2010
Method
Genome assembly quality: Assessment and improvement using the neutral indel model
- First Published March 19, 2010
Article
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
- First Published November 3, 2009
Resource
C. elegans" > Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
- First Published January 30, 2009
LETTER
Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)
- First Published January 12, 2009
LETTER
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
- First Published September 25, 2008
RESOURCE
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
- First Published November 5, 2007
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
RESOURCE
A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
- First Published June 13, 2007
LETTER
Using genomic data to unravel the root of the placental mammal phylogeny
- First Published February 23, 2007
Methods
ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements
- First Published October 19, 2006
LETTER
cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules
- First Published October 12, 2006
PERSPECTIVE
C. elegans: So many genes, such a little worm" > Genomics in C. elegans: So many genes, such a little worm
- First Published December 8, 2005
RESOURCE
Galaxy: A platform for interactive large-scale genome analysis
- First Published September 16, 2005
ARTICLE
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
- First Published July 15, 2005
Chicken Special/Resources
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
- First Published December 8, 2004
Chicken Special/Letters
Evolution and functional classification of vertebrate gene deserts
- First Published December 8, 2004
LETTER
Reconstructing large regions of an ancestral mammalian genome in silico
- First Published December 1, 2004
LETTER
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
RESOURCE
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
- First Published April 1, 2004
LETTER
Comparative Analysis of the α-Like Globin Clusters in Mouse, Rat, and Human Chromosomes Indicates a Mechanism Underlying Breaks in Conserved Synteny
- First Published April 1, 2004
Methods
Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat
- First Published April 1, 2004
ARTICLE
Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
RESOURCE
zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles
- First Published March 1, 2004
RESOURCE
GALA, a Database for Genomic Sequence Alignments and Annotations
- First Published April 1, 2003
ARTICLE
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
LETTER
Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
- First Published January 1, 2003
REPORT
3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome " > Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome
- First Published January 1, 2002
METHODS
Theories and Applications for Sequencing Randomly Selected Clones
- First Published January 18, 2001
ARTICLE
Sequence and Comparative Analysis of the Mouse 1-Megabase Region Orthologous to the Human 11p15 Imprinted Domain
- First Published November 1, 2000
REPORT
Naip Gene Array" > Genomic Sequence Analysis of the Mouse Naip Gene Array
- First Published August 1, 2000
LETTER
mnd2 Region of Chromosome 2p13" > Comparative Sequence of Human and Mouse BAC Clones from the mnd2 Region of Chromosome 2p13
- First Published January 1, 1999
GENOME METHODS
Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies
- First Published October 1, 1998
GENOME METHODS
A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence
- First Published September 1, 1998
RESEARCH
Comparative Sequence Analysis of a Gene-Rich Cluster at Human Chromosome 12p13 and its Syntenic Region in Mouse Chromosome 6
- First Published January 1, 1998
PERSPECTIVE
Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome
- First Published October 1, 1997
RESEARCH
Large-Scale Comparative Sequence Analysis of the Human and Murine Bruton’s Tyrosine Kinase Loci Reveals Conserved Regulatory Domains
- First Published April 1, 1997