Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
- First Published April 10, 2025
Research
Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina
- First Published March 6, 2025
Method
MCHelper automatically curates transposable element libraries across eukaryotic species
- First Published December 9, 2024
Method
Ultrafast genome-wide inference of pairwise coalescence times
- First Published August 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Method
Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model
- First Published November 12, 2020
Resource
Assembly and analysis of 100 full MHC haplotypes from the Danish population
- First Published August 3, 2017
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Method
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
- First Published December 16, 2016
Research
SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
- First Published November 13, 2015
Research
Epigenetic modification and inheritance in sexual reversal of fish
- First Published February 2, 2014
Resource
SOAPindel: Efficient identification of indels from short paired reads
- First Published September 12, 2012
Research
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
- First Published October 12, 2011
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Research
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
- First Published June 30, 2011
Method
Revealing the genetic structure of a trait by sequencing a population under selection
- First Published March 21, 2011
Resource
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- First Published October 27, 2010
Research
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
- First Published March 19, 2010
Resource
De novo assembly of human genomes with massively parallel short read sequencing
- First Published December 17, 2009
Resource
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- First Published June 4, 2009
RESOURCE
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- First Published November 24, 2008
RESOURCE
Mapping short DNA sequencing reads and calling variants using mapping quality scores
- First Published August 19, 2008
LETTER
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis
- First Published September 1, 2005
METHODS
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
- First Published September 1, 2002
METHODS
RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
- First Published May 1, 2002
LETTER
Alfresco—A Workbench for Comparative Genomic Sequence Analysis
- First Published August 1, 2000
LETTER
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
- First Published September 1, 1999
