Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Research
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
- First Published June 21, 2021
Research
Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
- First Published August 20, 2020
Resource
A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
- First Published October 24, 2019
Method
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Research
Arabidopsis thaliana" > Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
- First Published July 3, 2018
Research
Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Corrigendum
Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published December 1, 2017
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Corrigendum
Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published November 1, 2016
Method
A flexible method for estimating the fraction of fitness influencing mutations from large sequencing data sets
- First Published April 14, 2016
Research
Comprehensive identification and analysis of human accelerated regulatory DNA
- First Published June 23, 2015
Research
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
- First Published February 12, 2015
Research
Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals
- First Published November 13, 2014
Research
Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published October 7, 2014
Research
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
- First Published September 3, 2013
Research
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
- First Published May 29, 2013
Research
Personal and population genomics of human regulatory variation
- First Published September 5, 2012
Research
cis-trans regulation in the evolution of mouse gene expression" > Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
- First Published August 23, 2012
Research
cis-regulatory modules" > Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
- First Published July 10, 2012
Method
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
- First Published August 26, 2011
Research
Signatures of positive selection apparent in a small sample of human exomes
- First Published August 6, 2010
Research
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010
Research
A CTCF-independent role for cohesin in tissue-specific transcription
- First Published March 10, 2010
Perspective
Constructing genomic maps of positive selection in humans: Where do we go from here?
- First Published May 1, 2009
Letter
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
- First Published April 28, 2009
Resource
The genomic architecture of segmental duplications and associated copy number variants in dogs
- First Published January 7, 2009
Methods
Genome-wide nucleotide-level mammalian ancestor reconstruction
- First Published October 10, 2008
RESOURCE
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
- First Published June 24, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
ARTICLE
The landscape of histone modifications across 1% of the human genome in five human cell lines
- First Published June 13, 2007
LETTER
Genomic signatures of positive selection in humans and the limits of outlier approaches
- First Published July 6, 2006
LETTER
Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes
- First Published September 1, 2005
Methods
Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
- First Published February 1, 2005
LETTER
Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
- First Published January 1, 2003
LETTER
Interrogating a High-Density SNP Map for Signatures of Natural Selection
- First Published December 1, 2002