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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements

  • Luis E. Valentin-Alvarado
  • Ling-Dong Shi
  • Kathryn E. Appler
  • Alexander Crits-Christoph
  • Valerie De Anda
  • Benjamin A. Adler Michael L. Cui Lynn Ly Pedro Leão Richard J. Roberts
  • ... [+5 authors] ...,
  • Rohan Sachdeva
  • Brett J. Baker
  • David F. Savage
  • Jillian F. Banfield
  • First Published October 15, 2024
Research

Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity

  • Alexander Crits-Christoph
  • Nicholas Bhattacharya
  • Matthew R. Olm
  • Yun S. Song
  • Jillian F. Banfield
  • First Published December 23, 2020
Review

Accurate and complete genomes from metagenomes

  • Lin-Xing Chen
  • Karthik Anantharaman
  • Alon Shaiber
  • A. Murat Eren
  • Jillian F. Banfield
  • First Published March 18, 2020
Research

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

  • Daniela S. Aliaga Goltsman
  • Christine L. Sun
  • Diana M. Proctor
  • Daniel B. DiGiulio
  • Anna Robaczewska
  • Brian C. Thomas Gary M. Shaw
  • ... [+2 authors] ...,
  • David K. Stevenson
  • Susan P. Holmes
  • Jillian F. Banfield
  • David A. Relman
  • First Published September 19, 2018
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Method

Genome-reconstruction for eukaryotes from complex natural microbial communities

  • Patrick T. West
  • Alexander J. Probst
  • Igor V. Grigoriev
  • Brian C. Thomas
  • Jillian F. Banfield
  • First Published March 1, 2018
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov
  • Livia Tomasini
  • Bo Zhou
  • Nikolaos Vasmatzis
  • Gianfilippo Coppola
  • Mariangela Amenduni Reenal Pattni Michael Wilson
  • ... [+3 authors] ...,
  • Mark Gerstein
  • Sherman Weissman
  • Alexander E. Urban
  • Flora M. Vaccarino
  • First Published February 24, 2017
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