Read clouds uncover variation in complex regions of the human genome
- First Published August 18, 2015
Parente2: a fast and accurate method for detecting identity by descent
- First Published October 1, 2014
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- First Published September 5, 2012
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- First Published September 5, 2012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- First Published July 12, 2011
Efficient storage of high throughput DNA sequencing data using reference-based compression
- First Published January 18, 2011
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- First Published November 24, 2010
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010
A new strategy for genome assembly using short sequence reads and reduced representation libraries
- First Published February 1, 2010
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- First Published November 24, 2008
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- First Published October 10, 2008
Confounding between recombination and selection, and the Ped/Pop method for detecting selection
- First Published July 10, 2008
Effect of genetic divergence in identifying ancestral origin using HAPAA
- First Published March 18, 2008
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- First Published March 18, 2008
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
The landscape of histone modifications across 1% of the human genome in five human cell lines
- First Published June 13, 2007
Identification of novel peptide hormones in the human proteome by hidden Markov model screening
- First Published February 6, 2007
Græmlin: General and robust alignment of multiple large interaction networks
- First Published August 9, 2006
Distribution and intensity of constraint in mammalian genomic sequence
- First Published June 17, 2005
ProbCons: Probabilistic consistency-based multiple sequence alignment
- First Published February 1, 2005
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
- First Published December 8, 2004
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
- First Published April 1, 2004
Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
- First Published March 1, 2004
EnsMart: A Generic System for Fast and Flexible Access to Biological Data
- First Published January 5, 2004
Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
- First Published May 1, 2003
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- First Published March 12, 2003
Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
- First Published July 1, 2000
GeneWise in the Drosophila Annotation Experiment" > Using GeneWise in the Drosophila Annotation Experiment
- First Published April 1, 2000
Sequencing a Genome by Walking with Clone-End Sequences: A Mathematical Analysis
- First Published December 1, 1999
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
- First Published September 1, 1999