Method
Optimal marker genes for c-separated cell types with SepSolve
- First Published October 9, 2025
Research
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- First Published June 6, 2025
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Resource
Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
- First Published October 22, 2024
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Resource
Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
- First Published April 22, 2021
Resource
The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution
- First Published May 23, 2019
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
