Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Assessing DNA methylation detection for primary human tissue using Nanopore sequencing
- First Published March 7, 2025
Method
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
- First Published April 16, 2024
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Method
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Research
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans
- First Published October 19, 2021
Research
Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals
- First Published June 21, 2021
Method
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Research
Arabidopsis thaliana" > Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
- First Published July 3, 2018
Method
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Research
Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells
- First Published May 24, 2018
Research
Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Research
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
- First Published January 30, 2017
Method
A flexible method for estimating the fraction of fitness influencing mutations from large sequencing data sets
- First Published April 14, 2016
Research
Comprehensive identification and analysis of human accelerated regulatory DNA
- First Published June 23, 2015
Resource
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
Research
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
- First Published May 29, 2013
Research
Personal and population genomics of human regulatory variation
- First Published September 5, 2012
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Method
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
- First Published August 26, 2011
Research
Signatures of positive selection apparent in a small sample of human exomes
- First Published August 6, 2010
Perspective
Constructing genomic maps of positive selection in humans: Where do we go from here?
- First Published May 1, 2009
Resource
The genomic architecture of segmental duplications and associated copy number variants in dogs
- First Published January 7, 2009
Methods
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- First Published October 10, 2008
Methods
Genome-wide nucleotide-level mammalian ancestor reconstruction
- First Published October 10, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
LETTER
Genomic signatures of positive selection in humans and the limits of outlier approaches
- First Published July 6, 2006
LETTER
Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes
- First Published September 1, 2005
Methods
Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
- First Published February 1, 2005
LETTER
Interrogating a High-Density SNP Map for Signatures of Natural Selection
- First Published December 1, 2002